miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16497 3' -53.6 NC_004084.1 + 30709 0.66 0.845454
Target:  5'- gAGCGC-GUCGAgGagcugaUCGAugGgCUGUUCg -3'
miRNA:   3'- -UCGUGaCAGCUgC------AGCUugC-GGCAAG- -5'
16497 3' -53.6 NC_004084.1 + 36625 0.66 0.840221
Target:  5'- aAGCGCcagGUgaucggugacggcccCGACGUCGAugcCGCCGaUCc -3'
miRNA:   3'- -UCGUGa--CA---------------GCUGCAGCUu--GCGGCaAG- -5'
16497 3' -53.6 NC_004084.1 + 6812 0.66 0.836688
Target:  5'- cGCGCcGUCGACGUCauauCGUugaGUUCg -3'
miRNA:   3'- uCGUGaCAGCUGCAGcuu-GCGg--CAAG- -5'
16497 3' -53.6 NC_004084.1 + 21778 0.66 0.836688
Target:  5'- cGGCA---UCGACGUCGGG-GCCGUc- -3'
miRNA:   3'- -UCGUgacAGCUGCAGCUUgCGGCAag -5'
16497 3' -53.6 NC_004084.1 + 31199 0.66 0.827705
Target:  5'- cAGCGC-GUCGACGUCGu-CGCg---- -3'
miRNA:   3'- -UCGUGaCAGCUGCAGCuuGCGgcaag -5'
16497 3' -53.6 NC_004084.1 + 38393 0.66 0.827705
Target:  5'- cGCGaucGUCGuCcUCGAGCGCCGaUCg -3'
miRNA:   3'- uCGUga-CAGCuGcAGCUUGCGGCaAG- -5'
16497 3' -53.6 NC_004084.1 + 19967 0.66 0.827705
Target:  5'- cGGCcguggUUGaCGACGUCGAcguCGCgCGUUCg -3'
miRNA:   3'- -UCGu----GACaGCUGCAGCUu--GCG-GCAAG- -5'
16497 3' -53.6 NC_004084.1 + 54460 0.66 0.818516
Target:  5'- cGCACUGUCGcCG-CGGAuCGUC-UUCa -3'
miRNA:   3'- uCGUGACAGCuGCaGCUU-GCGGcAAG- -5'
16497 3' -53.6 NC_004084.1 + 5555 0.66 0.818516
Target:  5'- aAGCGauaagucgacgUUGUCGAgGUCGccAGCGCCGa-- -3'
miRNA:   3'- -UCGU-----------GACAGCUgCAGC--UUGCGGCaag -5'
16497 3' -53.6 NC_004084.1 + 53264 0.66 0.818516
Target:  5'- gAGUGCUGccucagggaCGACGUCGGucgccACGCCGa-- -3'
miRNA:   3'- -UCGUGACa--------GCUGCAGCU-----UGCGGCaag -5'
16497 3' -53.6 NC_004084.1 + 48598 0.66 0.80913
Target:  5'- uAGUGCUGgaucgaGAUGUC-AACGCCGUg- -3'
miRNA:   3'- -UCGUGACag----CUGCAGcUUGCGGCAag -5'
16497 3' -53.6 NC_004084.1 + 5360 0.66 0.80913
Target:  5'- gAGgACUGggacgaucUCGACGUCGAAC-CUGggCg -3'
miRNA:   3'- -UCgUGAC--------AGCUGCAGCUUGcGGCaaG- -5'
16497 3' -53.6 NC_004084.1 + 4182 0.66 0.80913
Target:  5'- cGGCGCUGaucgcucCGACGUCGAGauCCGa-- -3'
miRNA:   3'- -UCGUGACa------GCUGCAGCUUgcGGCaag -5'
16497 3' -53.6 NC_004084.1 + 46299 0.66 0.799557
Target:  5'- cGUAgUcGUCGACGUUGA-CuCCGUUCg -3'
miRNA:   3'- uCGUgA-CAGCUGCAGCUuGcGGCAAG- -5'
16497 3' -53.6 NC_004084.1 + 19075 0.66 0.799557
Target:  5'- gGGCGCggccGUCuACGUCGA-CGUCGaUCa -3'
miRNA:   3'- -UCGUGa---CAGcUGCAGCUuGCGGCaAG- -5'
16497 3' -53.6 NC_004084.1 + 29218 0.67 0.789808
Target:  5'- gAGCGC-GUCGACGUUGuuCGCgGg-- -3'
miRNA:   3'- -UCGUGaCAGCUGCAGCuuGCGgCaag -5'
16497 3' -53.6 NC_004084.1 + 31343 0.67 0.779895
Target:  5'- gAGCAgUucgucGUCGACGUCGAGCaUCGcgCg -3'
miRNA:   3'- -UCGUgA-----CAGCUGCAGCUUGcGGCaaG- -5'
16497 3' -53.6 NC_004084.1 + 8233 0.67 0.779895
Target:  5'- uGCAgaGggCGACGUCGAgacgaucgACGCCGc-- -3'
miRNA:   3'- uCGUgaCa-GCUGCAGCU--------UGCGGCaag -5'
16497 3' -53.6 NC_004084.1 + 51276 0.67 0.769827
Target:  5'- cGCugUGUCGuCGUCGAGgauaucCGUCGa-- -3'
miRNA:   3'- uCGugACAGCuGCAGCUU------GCGGCaag -5'
16497 3' -53.6 NC_004084.1 + 38775 0.67 0.769827
Target:  5'- cGCACga-CGACcuUCGGGCGCuCGUUCu -3'
miRNA:   3'- uCGUGacaGCUGc-AGCUUGCG-GCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.