miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16497 5' -56.9 NC_004084.1 + 3082 0.71 0.365692
Target:  5'- cCGCUCGuCGAcgugcguUCCGGCGGGcuccUCAuCCACg -3'
miRNA:   3'- cGCGAGC-GCU-------AGGCUGUCC----AGU-GGUG- -5'
16497 5' -56.9 NC_004084.1 + 5001 0.66 0.667457
Target:  5'- uCGCUCGaguCGAUCCGAgAGGggAUCAa -3'
miRNA:   3'- cGCGAGC---GCUAGGCUgUCCagUGGUg -5'
16497 5' -56.9 NC_004084.1 + 10846 0.72 0.341696
Target:  5'- cGCGCUCGCGAacgUCCucgaACGGcGUCuccuCCACu -3'
miRNA:   3'- -CGCGAGCGCU---AGGc---UGUC-CAGu---GGUG- -5'
16497 5' -56.9 NC_004084.1 + 15698 0.72 0.341696
Target:  5'- cUGCUCGCGAUCgGugAcGGUgAUCGCc -3'
miRNA:   3'- cGCGAGCGCUAGgCugU-CCAgUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 17106 0.67 0.585599
Target:  5'- cGCGCUCGcCGGUCCG-CuccaggacgucgaugAGGUCGgCGg -3'
miRNA:   3'- -CGCGAGC-GCUAGGCuG---------------UCCAGUgGUg -5'
16497 5' -56.9 NC_004084.1 + 18120 0.67 0.581317
Target:  5'- aGCgGUUCGCGAUCCGgAUGGacuggaacgacGUCGCCGg -3'
miRNA:   3'- -CG-CGAGCGCUAGGC-UGUC-----------CAGUGGUg -5'
16497 5' -56.9 NC_004084.1 + 18966 0.72 0.318092
Target:  5'- gGCGCUCGCGccagucggCCGGCggggaagucguAGGUC-CCGCu -3'
miRNA:   3'- -CGCGAGCGCua------GGCUG-----------UCCAGuGGUG- -5'
16497 5' -56.9 NC_004084.1 + 19278 0.66 0.6567
Target:  5'- cGCcCUCGCGAgcuuuauacuUCaGGCucuccGGGUCACCGCc -3'
miRNA:   3'- -CGcGAGCGCU----------AGgCUG-----UCCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 22462 0.68 0.507858
Target:  5'- gGCGCUCGCGA--CGGCugcguGGUgGCgGCu -3'
miRNA:   3'- -CGCGAGCGCUagGCUGu----CCAgUGgUG- -5'
16497 5' -56.9 NC_004084.1 + 26667 0.71 0.349841
Target:  5'- cGCGUccaUCGCGGUCUGAgAGGagGCgACa -3'
miRNA:   3'- -CGCG---AGCGCUAGGCUgUCCagUGgUG- -5'
16497 5' -56.9 NC_004084.1 + 27259 0.67 0.570643
Target:  5'- cGCGCUCGacgaGAUCUcGC-GGUCcgaACCGCu -3'
miRNA:   3'- -CGCGAGCg---CUAGGcUGuCCAG---UGGUG- -5'
16497 5' -56.9 NC_004084.1 + 27842 0.67 0.592032
Target:  5'- cCGCUC-CGGUucgCCGACc-GUCGCCGCg -3'
miRNA:   3'- cGCGAGcGCUA---GGCUGucCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 28982 0.68 0.518139
Target:  5'- cGCGUUCGCGGUgaagcucgccgUCGACGGca-ACCGCg -3'
miRNA:   3'- -CGCGAGCGCUA-----------GGCUGUCcagUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 29422 0.66 0.644843
Target:  5'- cUGCaUCGCGGUcaucaggCCGACGucGGUCGCgCGCu -3'
miRNA:   3'- cGCG-AGCGCUA-------GGCUGU--CCAGUG-GUG- -5'
16497 5' -56.9 NC_004084.1 + 31482 0.66 0.635131
Target:  5'- aGCGCguccgccgUCGCGAUggaGGCA-GUCGCCGCc -3'
miRNA:   3'- -CGCG--------AGCGCUAgg-CUGUcCAGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 33689 0.7 0.438616
Target:  5'- aCGCUCGCuGAUCCaAUAGG-CACCu- -3'
miRNA:   3'- cGCGAGCG-CUAGGcUGUCCaGUGGug -5'
16497 5' -56.9 NC_004084.1 + 34800 0.66 0.667457
Target:  5'- cGCGUccaUUGCGGUCugCGACGuGcUCACCGCg -3'
miRNA:   3'- -CGCG---AGCGCUAG--GCUGUcC-AGUGGUG- -5'
16497 5' -56.9 NC_004084.1 + 34947 0.69 0.487565
Target:  5'- gGCGUUCGUGcgCuagCGGCuGGUCGCgACg -3'
miRNA:   3'- -CGCGAGCGCuaG---GCUGuCCAGUGgUG- -5'
16497 5' -56.9 NC_004084.1 + 35128 0.67 0.570643
Target:  5'- cGCGCUCGC--UCgGgACuGGUCgGCCGCu -3'
miRNA:   3'- -CGCGAGCGcuAGgC-UGuCCAG-UGGUG- -5'
16497 5' -56.9 NC_004084.1 + 35396 0.66 0.6567
Target:  5'- -aGCUCcagaucaCGA-CCGACGGGUCAUCGu -3'
miRNA:   3'- cgCGAGc------GCUaGGCUGUCCAGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.