Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16499 | 3' | -56.4 | NC_004084.1 | + | 14040 | 0.66 | 0.704935 |
Target: 5'- aACgUCGGGuGCuUGGCGaGACGAAgaGGu -3' miRNA: 3'- -UGaAGCCC-UG-ACCGCcCUGCUUgaCC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 56063 | 0.66 | 0.694358 |
Target: 5'- gACUUCGaGGACgacGCGGaacGACGAcuCUGGc -3' miRNA: 3'- -UGAAGC-CCUGac-CGCC---CUGCUu-GACC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 43745 | 0.66 | 0.673041 |
Target: 5'- --aUCGaGGACccGGcCGGGACGcucgcgggcaucGACUGGg -3' miRNA: 3'- ugaAGC-CCUGa-CC-GCCCUGC------------UUGACC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 28478 | 0.67 | 0.640813 |
Target: 5'- ---cUGGGACUGGCacGGAgccaacaaCGGGCUGGc -3' miRNA: 3'- ugaaGCCCUGACCGc-CCU--------GCUUGACC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 30421 | 0.67 | 0.630042 |
Target: 5'- gACgggCGGcGACggaagcgaUGGCGaGGACGAcgucccGCUGGg -3' miRNA: 3'- -UGaa-GCC-CUG--------ACCGC-CCUGCU------UGACC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 51201 | 0.7 | 0.483131 |
Target: 5'- --gUCGGcGCUGGCGcGGGCu-ACUGGg -3' miRNA: 3'- ugaAGCCcUGACCGC-CCUGcuUGACC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 24537 | 0.7 | 0.453635 |
Target: 5'- -aUUCGuGGACUGGCGG--CG-ACUGGa -3' miRNA: 3'- ugAAGC-CCUGACCGCCcuGCuUGACC- -5' |
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16499 | 3' | -56.4 | NC_004084.1 | + | 56645 | 1.11 | 0.00074 |
Target: 5'- aACUUCGGGACUGGCGGGACGAACUGGg -3' miRNA: 3'- -UGAAGCCCUGACCGCCCUGCUUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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