Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16499 | 5' | -52.5 | NC_004084.1 | + | 2179 | 0.76 | 0.324839 |
Target: 5'- gCACGGGagUCGUCAcggaUCUGCGCCaguaGCGCa -3' miRNA: 3'- -GUGCUCa-AGCAGU----AGAUGCGG----UGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 2866 | 0.7 | 0.656412 |
Target: 5'- gACGAGUUCGUCG-CggccaGCCAgCGCg -3' miRNA: 3'- gUGCUCAAGCAGUaGaug--CGGU-GCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 6554 | 0.67 | 0.841782 |
Target: 5'- gGCGuccgguAGUUCGacUCGUCga-GCCACGCg -3' miRNA: 3'- gUGC------UCAAGC--AGUAGaugCGGUGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 10336 | 0.66 | 0.867258 |
Target: 5'- aGCG-GUUCGUCuUCUA-GCCcCGCg -3' miRNA: 3'- gUGCuCAAGCAGuAGAUgCGGuGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 10919 | 0.7 | 0.678609 |
Target: 5'- gGgGAGUUCGUCGUCUuCGCCGa--- -3' miRNA: 3'- gUgCUCAAGCAGUAGAuGCGGUgcga -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 16222 | 0.66 | 0.850512 |
Target: 5'- aCGCGAGUUCGUCgacggaGUCgUACGUCuccuccauCGCc -3' miRNA: 3'- -GUGCUCAAGCAG------UAG-AUGCGGu-------GCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 16320 | 0.66 | 0.850512 |
Target: 5'- aACGGGUUCugGUCAUUcACGUC-CGCg -3' miRNA: 3'- gUGCUCAAG--CAGUAGaUGCGGuGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 18773 | 0.66 | 0.883001 |
Target: 5'- gCGCGAGUUCcUCG---GCGUCGCGUa -3' miRNA: 3'- -GUGCUCAAGcAGUagaUGCGGUGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 21039 | 0.66 | 0.850512 |
Target: 5'- -cCGAGUUCGUCGaagUCagGCGgCCACcGCa -3' miRNA: 3'- guGCUCAAGCAGU---AGa-UGC-GGUG-CGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 27887 | 0.67 | 0.841782 |
Target: 5'- gACGAacagCGUCAUUcGCGCuCGCGCa -3' miRNA: 3'- gUGCUcaa-GCAGUAGaUGCG-GUGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 27979 | 0.66 | 0.875259 |
Target: 5'- aGCGGGa-CGUCGUCcuCGCCAuCGCUu -3' miRNA: 3'- gUGCUCaaGCAGUAGauGCGGU-GCGA- -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 30292 | 0.67 | 0.822724 |
Target: 5'- gACGAGgaCGUCAUUgacGCGCUcgucgagGCGCa -3' miRNA: 3'- gUGCUCaaGCAGUAGa--UGCGG-------UGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 31344 | 0.66 | 0.882238 |
Target: 5'- aGC-AGUUCGUCGUCgACGUCgagcaucGCGCg -3' miRNA: 3'- gUGcUCAAGCAGUAGaUGCGG-------UGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 35170 | 0.67 | 0.832826 |
Target: 5'- --aGAGgaccUUGUCGUCgACGCCACcGCUc -3' miRNA: 3'- gugCUCa---AGCAGUAGaUGCGGUG-CGA- -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 35413 | 0.67 | 0.832826 |
Target: 5'- gACGGGUcaUCGUCGUCgaucuCGCU-CGCg -3' miRNA: 3'- gUGCUCA--AGCAGUAGau---GCGGuGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 46198 | 0.66 | 0.867258 |
Target: 5'- gGCGAGaUCGUCGUCggaUGCGUCgACGa- -3' miRNA: 3'- gUGCUCaAGCAGUAG---AUGCGG-UGCga -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 46872 | 0.66 | 0.859007 |
Target: 5'- aGCGuuugCGUCggCUGcCGCCACGCc -3' miRNA: 3'- gUGCucaaGCAGuaGAU-GCGGUGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 49606 | 0.7 | 0.668638 |
Target: 5'- gGCGAGUUCGcCGUCgacggagaucucguCGCCGgGCUc -3' miRNA: 3'- gUGCUCAAGCaGUAGau------------GCGGUgCGA- -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 49806 | 0.69 | 0.711535 |
Target: 5'- uCGCGAagUCGUCGU---CGCCGCGCa -3' miRNA: 3'- -GUGCUcaAGCAGUAgauGCGGUGCGa -5' |
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16499 | 5' | -52.5 | NC_004084.1 | + | 50360 | 0.68 | 0.784999 |
Target: 5'- gGCGAcaucUUCGagAUCaACGCCGCGCa -3' miRNA: 3'- gUGCUc---AAGCagUAGaUGCGGUGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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