miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1650 5' -59.1 NC_001347.2 + 172038 0.66 0.880426
Target:  5'- cGGCucuCCAUCG-CCa-GCGCGCGCUg -3'
miRNA:   3'- cCCGu--GGUAGUaGGggUGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 105962 0.66 0.880426
Target:  5'- -cGCAgCGUCGgcgagCCGCGCACGCCc -3'
miRNA:   3'- ccCGUgGUAGUagg--GGUGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 75739 0.66 0.880426
Target:  5'- cGGGCGCagugguggUAUCAUCgUCCugGaaaaACGCCg -3'
miRNA:   3'- -CCCGUG--------GUAGUAG-GGGugCg---UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 114552 0.66 0.880426
Target:  5'- cGGCAaCAUCcucuucUCCCUAgGCACGCUc -3'
miRNA:   3'- cCCGUgGUAGu-----AGGGGUgCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 127773 0.66 0.880426
Target:  5'- -cGCAUCAUCAcgccguUCCCCGCcuGCAccguCGCCg -3'
miRNA:   3'- ccCGUGGUAGU------AGGGGUG--CGU----GCGGa -5'
1650 5' -59.1 NC_001347.2 + 38713 0.66 0.873591
Target:  5'- -aGCGCCGUCGccUCCUCG-GCGCGCa- -3'
miRNA:   3'- ccCGUGGUAGU--AGGGGUgCGUGCGga -5'
1650 5' -59.1 NC_001347.2 + 116693 0.66 0.869395
Target:  5'- cGGCGCUGUCcucgcgacgugagggAUCCCagccgcuGCGCACGCUc -3'
miRNA:   3'- cCCGUGGUAG---------------UAGGGg------UGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 82912 0.66 0.866559
Target:  5'- cGGGCcgccgcuaucGCCAUgGcCCCCuCGCACGUg- -3'
miRNA:   3'- -CCCG----------UGGUAgUaGGGGuGCGUGCGga -5'
1650 5' -59.1 NC_001347.2 + 185526 0.66 0.859336
Target:  5'- gGGGCGCCAcUCcuaCgCCACGCGauugGCCg -3'
miRNA:   3'- -CCCGUGGU-AGua-GgGGUGCGUg---CGGa -5'
1650 5' -59.1 NC_001347.2 + 130846 0.66 0.859336
Target:  5'- -aGC-CCAUCAUCCCgGUGCAgucCGCCa -3'
miRNA:   3'- ccCGuGGUAGUAGGGgUGCGU---GCGGa -5'
1650 5' -59.1 NC_001347.2 + 136546 0.66 0.851926
Target:  5'- aGGUuuuCCAUgcggCAUCCCCGgCGCAUGCg- -3'
miRNA:   3'- cCCGu--GGUA----GUAGGGGU-GCGUGCGga -5'
1650 5' -59.1 NC_001347.2 + 153829 0.66 0.851926
Target:  5'- uGGGUGCU-UCGagUCCACaGCGCGCCa -3'
miRNA:   3'- -CCCGUGGuAGUagGGGUG-CGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 137876 0.66 0.851926
Target:  5'- cGGGCACCGUUAUgUauaCACG-ACGUCg -3'
miRNA:   3'- -CCCGUGGUAGUAgGg--GUGCgUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 197181 0.66 0.851926
Target:  5'- cGGGC-CCAcauUCAaaaguuugagcgUCUUCAUGUACGCCg -3'
miRNA:   3'- -CCCGuGGU---AGU------------AGGGGUGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 185031 0.66 0.851926
Target:  5'- gGGGguCCAguUCGg-CCgGCGCGCGCUUg -3'
miRNA:   3'- -CCCguGGU--AGUagGGgUGCGUGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 41129 0.67 0.847392
Target:  5'- aGGGCGcagcacucggcuaccCCGUC--CCCCGCGCGgaaaucCGCCg -3'
miRNA:   3'- -CCCGU---------------GGUAGuaGGGGUGCGU------GCGGa -5'
1650 5' -59.1 NC_001347.2 + 184775 0.67 0.844335
Target:  5'- aGGGCuACCAguugaugCAcUUCCACGCccaGCGCCg -3'
miRNA:   3'- -CCCG-UGGUa------GUaGGGGUGCG---UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 207638 0.67 0.844335
Target:  5'- cGGUACCGuaccUCGgcgacgCUCCAUGCcgGCGCCUa -3'
miRNA:   3'- cCCGUGGU----AGUa-----GGGGUGCG--UGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 160983 0.67 0.836569
Target:  5'- gGGGCcgACCAUCGUCU---CGCAgCGCCa -3'
miRNA:   3'- -CCCG--UGGUAGUAGGgguGCGU-GCGGa -5'
1650 5' -59.1 NC_001347.2 + 41252 0.67 0.836569
Target:  5'- uGGGcCGCCAaccugUCGUCaCCuuacugUugGCGCGCCa -3'
miRNA:   3'- -CCC-GUGGU-----AGUAG-GG------GugCGUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.