miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1650 5' -59.1 NC_001347.2 + 126420 1.08 0.002584
Target:  5'- uGGGCACCAUCAUCCCCACGCACGCCUc -3'
miRNA:   3'- -CCCGUGGUAGUAGGGGUGCGUGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 188870 0.78 0.26992
Target:  5'- cGGCGCUGcCAUCCUCACGCcgACGCCUg -3'
miRNA:   3'- cCCGUGGUaGUAGGGGUGCG--UGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 81656 0.77 0.308485
Target:  5'- cGGUACCGaagaccugccacUCAUCCUCGgGCACGCCg -3'
miRNA:   3'- cCCGUGGU------------AGUAGGGGUgCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 89551 0.74 0.422535
Target:  5'- cGGGCACC-UCGcgCCCCgagaagcggccGCGCAcCGCCUg -3'
miRNA:   3'- -CCCGUGGuAGUa-GGGG-----------UGCGU-GCGGA- -5'
1650 5' -59.1 NC_001347.2 + 38030 0.74 0.430995
Target:  5'- cGGGCGCCGacucgCGUCCCaGCGCcagcGCGCCc -3'
miRNA:   3'- -CCCGUGGUa----GUAGGGgUGCG----UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 110559 0.73 0.483734
Target:  5'- -cGCGCCAUCAUCCgC-CGCACGgCUc -3'
miRNA:   3'- ccCGUGGUAGUAGGgGuGCGUGCgGA- -5'
1650 5' -59.1 NC_001347.2 + 107635 0.73 0.492827
Target:  5'- cGGCGCCA-CGUUCCCACGggaCGCGCUc -3'
miRNA:   3'- cCCGUGGUaGUAGGGGUGC---GUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 195710 0.73 0.492827
Target:  5'- cGGCGCCcaaaCAUCCCaa-GCACGCCa -3'
miRNA:   3'- cCCGUGGua--GUAGGGgugCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 96924 0.73 0.511242
Target:  5'- cGGGCcgccGCCAgCGUCCgCGCcuGCACGCCg -3'
miRNA:   3'- -CCCG----UGGUaGUAGGgGUG--CGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 77546 0.72 0.520557
Target:  5'- cGGCGCUAUU-UCCCUAcCGCGCGCUg -3'
miRNA:   3'- cCCGUGGUAGuAGGGGU-GCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 125240 0.72 0.529937
Target:  5'- cGGCaACCGUuucccCGUCCUCGCGgACGCCg -3'
miRNA:   3'- cCCG-UGGUA-----GUAGGGGUGCgUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 93626 0.72 0.539379
Target:  5'- cGGCACCcuuccacUCGUCCgUACGCGCGaCCUc -3'
miRNA:   3'- cCCGUGGu------AGUAGGgGUGCGUGC-GGA- -5'
1650 5' -59.1 NC_001347.2 + 156877 0.72 0.548876
Target:  5'- gGGGUgucgacccaucACCGUCAUCCgCCGucuccgccgUGCGCGCCg -3'
miRNA:   3'- -CCCG-----------UGGUAGUAGG-GGU---------GCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 173201 0.72 0.558426
Target:  5'- cGGGCACCGUgCAgaUUCUgGUGCACGCCg -3'
miRNA:   3'- -CCCGUGGUA-GU--AGGGgUGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 164682 0.71 0.577658
Target:  5'- cGGCGCCGUggcCGUUgCCGCGUuaGCGCCg -3'
miRNA:   3'- cCCGUGGUA---GUAGgGGUGCG--UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 200147 0.71 0.58733
Target:  5'- cGGGCGCggaaagUGUCcUCgCCACGCugGCCg -3'
miRNA:   3'- -CCCGUG------GUAGuAGgGGUGCGugCGGa -5'
1650 5' -59.1 NC_001347.2 + 90783 0.71 0.597032
Target:  5'- cGGGUggauccuCCGUCGUCCUCGCGgC-CGCCa -3'
miRNA:   3'- -CCCGu------GGUAGUAGGGGUGC-GuGCGGa -5'
1650 5' -59.1 NC_001347.2 + 111515 0.71 0.606757
Target:  5'- gGGGCucucacGCuCGUCAUCCCCucgugGCACGUCUu -3'
miRNA:   3'- -CCCG------UG-GUAGUAGGGGug---CGUGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 156949 0.71 0.616499
Target:  5'- uGGGCACCGUCAUCgUgGuggcgaGCGCGCUc -3'
miRNA:   3'- -CCCGUGGUAGUAGgGgUg-----CGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 193489 0.71 0.626252
Target:  5'- cGGCGCCGUguUCgCCUACGaCGCGCa- -3'
miRNA:   3'- cCCGUGGUAguAG-GGGUGC-GUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.