miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1650 5' -59.1 NC_001347.2 + 41252 0.67 0.836569
Target:  5'- uGGGcCGCCAaccugUCGUCaCCuuacugUugGCGCGCCa -3'
miRNA:   3'- -CCC-GUGGU-----AGUAG-GG------GugCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 160983 0.67 0.836569
Target:  5'- gGGGCcgACCAUCGUCU---CGCAgCGCCa -3'
miRNA:   3'- -CCCG--UGGUAGUAGGgguGCGU-GCGGa -5'
1650 5' -59.1 NC_001347.2 + 91392 0.67 0.836569
Target:  5'- ---gACCAagAUCCCCGUGCugGCCa -3'
miRNA:   3'- cccgUGGUagUAGGGGUGCGugCGGa -5'
1650 5' -59.1 NC_001347.2 + 188141 0.67 0.828633
Target:  5'- aGGC-CCAUgGUUCUCugGCACcgGCCg -3'
miRNA:   3'- cCCGuGGUAgUAGGGGugCGUG--CGGa -5'
1650 5' -59.1 NC_001347.2 + 196361 0.67 0.828633
Target:  5'- uGGCGucCCAcCAUUCCCGuuuggaGCACGCCg -3'
miRNA:   3'- cCCGU--GGUaGUAGGGGUg-----CGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 200940 0.67 0.828633
Target:  5'- uGGC-CCGUCGaccuuaUCCCCAuCGUcguCGCCUa -3'
miRNA:   3'- cCCGuGGUAGU------AGGGGU-GCGu--GCGGA- -5'
1650 5' -59.1 NC_001347.2 + 44313 0.67 0.828633
Target:  5'- cGGGCggcuaagucaccGCCGUUcUCCCCAucCGUccgaGCGCCg -3'
miRNA:   3'- -CCCG------------UGGUAGuAGGGGU--GCG----UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 13536 0.67 0.820536
Target:  5'- cGGGcCGCCGUgcuggagggCcgCCCCACGCccaaaccuaccAUGCCUc -3'
miRNA:   3'- -CCC-GUGGUA---------GuaGGGGUGCG-----------UGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 128325 0.67 0.812283
Target:  5'- cGGC-UCGUCGUCaCCCGCGUGuggcCGCCg -3'
miRNA:   3'- cCCGuGGUAGUAG-GGGUGCGU----GCGGa -5'
1650 5' -59.1 NC_001347.2 + 142864 0.67 0.812283
Target:  5'- cGGCACCAgagaCAgagaccgCCgCCGCGCugGCa- -3'
miRNA:   3'- cCCGUGGUa---GUa------GG-GGUGCGugCGga -5'
1650 5' -59.1 NC_001347.2 + 189526 0.67 0.812283
Target:  5'- cGGGCacGCCGUCGacgguaCCCGC-CACGCUg -3'
miRNA:   3'- -CCCG--UGGUAGUag----GGGUGcGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 139100 0.68 0.795338
Target:  5'- aGGCGgauuUCggCGUCUCUguGCGCACGCCUg -3'
miRNA:   3'- cCCGU----GGuaGUAGGGG--UGCGUGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 38184 0.68 0.795338
Target:  5'- cGGCACgGUC--CCCgACGC-CGCCg -3'
miRNA:   3'- cCCGUGgUAGuaGGGgUGCGuGCGGa -5'
1650 5' -59.1 NC_001347.2 + 14281 0.68 0.777857
Target:  5'- cGGCGCUgcaGUUAugccgccggagcUCCCCGCGC-UGCCUg -3'
miRNA:   3'- cCCGUGG---UAGU------------AGGGGUGCGuGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 209617 0.68 0.777857
Target:  5'- cGGCucCCAUCAUUCCCuucucuCGCGC-CCUc -3'
miRNA:   3'- cCCGu-GGUAGUAGGGGu-----GCGUGcGGA- -5'
1650 5' -59.1 NC_001347.2 + 7710 0.68 0.77697
Target:  5'- cGGGCuCCGgggguUCCCCauaaguaGCGUGCGCCa -3'
miRNA:   3'- -CCCGuGGUagu--AGGGG-------UGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 140919 0.68 0.768037
Target:  5'- cGGGCGCCAcgcaggccuUCAaccuggaucugaaUCCCUACGCcgugGCCUu -3'
miRNA:   3'- -CCCGUGGU---------AGU-------------AGGGGUGCGug--CGGA- -5'
1650 5' -59.1 NC_001347.2 + 23262 0.68 0.759902
Target:  5'- uGGGCGCCccCAcCCCCGCGacccuCGCGCg- -3'
miRNA:   3'- -CCCGUGGuaGUaGGGGUGC-----GUGCGga -5'
1650 5' -59.1 NC_001347.2 + 188051 0.68 0.758083
Target:  5'- cGGUACCcaagaaacauGUCCCCACGCA-GCCg -3'
miRNA:   3'- cCCGUGGuag-------UAGGGGUGCGUgCGGa -5'
1650 5' -59.1 NC_001347.2 + 158293 0.68 0.757172
Target:  5'- cGGG-ACCGUCAagaaaagagcgucaUCUucaaCACGCACGCCg -3'
miRNA:   3'- -CCCgUGGUAGU--------------AGGg---GUGCGUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.