miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1650 5' -59.1 NC_001347.2 + 1843 0.69 0.732219
Target:  5'- cGGCGCCG-CA-CCCCGCGU-CGCUg -3'
miRNA:   3'- cCCGUGGUaGUaGGGGUGCGuGCGGa -5'
1650 5' -59.1 NC_001347.2 + 7710 0.68 0.77697
Target:  5'- cGGGCuCCGgggguUCCCCauaaguaGCGUGCGCCa -3'
miRNA:   3'- -CCCGuGGUagu--AGGGG-------UGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 13536 0.67 0.820536
Target:  5'- cGGGcCGCCGUgcuggagggCcgCCCCACGCccaaaccuaccAUGCCUc -3'
miRNA:   3'- -CCC-GUGGUA---------GuaGGGGUGCG-----------UGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 14281 0.68 0.777857
Target:  5'- cGGCGCUgcaGUUAugccgccggagcUCCCCGCGC-UGCCUg -3'
miRNA:   3'- cCCGUGG---UAGU------------AGGGGUGCGuGCGGA- -5'
1650 5' -59.1 NC_001347.2 + 18447 0.67 0.836569
Target:  5'- uGGGCuCCAUCGagggCCUGCGCGCcuGCCg -3'
miRNA:   3'- -CCCGuGGUAGUag--GGGUGCGUG--CGGa -5'
1650 5' -59.1 NC_001347.2 + 23262 0.68 0.759902
Target:  5'- uGGGCGCCccCAcCCCCGCGacccuCGCGCg- -3'
miRNA:   3'- -CCCGUGGuaGUaGGGGUGC-----GUGCGga -5'
1650 5' -59.1 NC_001347.2 + 26916 0.7 0.684609
Target:  5'- cGGCACCuAUCAUCauuaCCugauugacaACGCACGCUc -3'
miRNA:   3'- cCCGUGG-UAGUAGg---GG---------UGCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 38030 0.74 0.430995
Target:  5'- cGGGCGCCGacucgCGUCCCaGCGCcagcGCGCCc -3'
miRNA:   3'- -CCCGUGGUa----GUAGGGgUGCG----UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 38184 0.68 0.795338
Target:  5'- cGGCACgGUC--CCCgACGC-CGCCg -3'
miRNA:   3'- cCCGUGgUAGuaGGGgUGCGuGCGGa -5'
1650 5' -59.1 NC_001347.2 + 38430 0.69 0.703826
Target:  5'- cGGCGaCGUCGUCCCCGcCGC-CGUCc -3'
miRNA:   3'- cCCGUgGUAGUAGGGGU-GCGuGCGGa -5'
1650 5' -59.1 NC_001347.2 + 38713 0.66 0.873591
Target:  5'- -aGCGCCGUCGccUCCUCG-GCGCGCa- -3'
miRNA:   3'- ccCGUGGUAGU--AGGGGUgCGUGCGga -5'
1650 5' -59.1 NC_001347.2 + 38832 0.69 0.713356
Target:  5'- -cGCGCCGugccgaaaccacUCGUCCgCGuCGCGCGCCg -3'
miRNA:   3'- ccCGUGGU------------AGUAGGgGU-GCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 39143 0.69 0.722823
Target:  5'- cGGCAgCAgCGUgCCCGCGuCGCGCUg -3'
miRNA:   3'- cCCGUgGUaGUAgGGGUGC-GUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 41129 0.67 0.847392
Target:  5'- aGGGCGcagcacucggcuaccCCGUC--CCCCGCGCGgaaaucCGCCg -3'
miRNA:   3'- -CCCGU---------------GGUAGuaGGGGUGCGU------GCGGa -5'
1650 5' -59.1 NC_001347.2 + 41252 0.67 0.836569
Target:  5'- uGGGcCGCCAaccugUCGUCaCCuuacugUugGCGCGCCa -3'
miRNA:   3'- -CCC-GUGGU-----AGUAG-GG------GugCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 44313 0.67 0.828633
Target:  5'- cGGGCggcuaagucaccGCCGUUcUCCCCAucCGUccgaGCGCCg -3'
miRNA:   3'- -CCCG------------UGGUAGuAGGGGU--GCG----UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 67388 0.69 0.732219
Target:  5'- -uGCACCGUC-UCgCCCGCGCuguggGCGCUg -3'
miRNA:   3'- ccCGUGGUAGuAG-GGGUGCG-----UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 75739 0.66 0.880426
Target:  5'- cGGGCGCagugguggUAUCAUCgUCCugGaaaaACGCCg -3'
miRNA:   3'- -CCCGUG--------GUAGUAG-GGGugCg---UGCGGa -5'
1650 5' -59.1 NC_001347.2 + 77546 0.72 0.520557
Target:  5'- cGGCGCUAUU-UCCCUAcCGCGCGCUg -3'
miRNA:   3'- cCCGUGGUAGuAGGGGU-GCGUGCGGa -5'
1650 5' -59.1 NC_001347.2 + 80520 0.67 0.836569
Target:  5'- aGGGCGCgcaGUCAaucaCCCCAgCGUGCgGCCUu -3'
miRNA:   3'- -CCCGUGg--UAGUa---GGGGU-GCGUG-CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.