miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16500 3' -55.6 NC_004084.1 + 47909 0.66 0.717822
Target:  5'- -gGUCGCUCcgCGAggugccgcGCGAuCCaGGGCAa -3'
miRNA:   3'- gaUAGUGAGuaGCU--------CGCUcGG-CCCGU- -5'
16500 3' -55.6 NC_004084.1 + 45681 0.66 0.70712
Target:  5'- gUGUgCGCUCucUGGGCcAGUCGGGCAu -3'
miRNA:   3'- gAUA-GUGAGuaGCUCGcUCGGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 34943 0.67 0.662595
Target:  5'- --cUCGCUgAUCGAguccaucGCGGuCCGGGCGa -3'
miRNA:   3'- gauAGUGAgUAGCU-------CGCUcGGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 30934 0.67 0.652732
Target:  5'- -gAUCGCUCGUCGAcGuCGAGCuCGaGGaCGc -3'
miRNA:   3'- gaUAGUGAGUAGCU-C-GCUCG-GC-CC-GU- -5'
16500 3' -55.6 NC_004084.1 + 39580 0.67 0.619785
Target:  5'- ----aGCUCGUCGA-CGAGgucCCGGGCGc -3'
miRNA:   3'- gauagUGAGUAGCUcGCUC---GGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 47382 0.67 0.619785
Target:  5'- ---cCGCgUCGUCGAcgGCGAGCUccaGGGCGc -3'
miRNA:   3'- gauaGUG-AGUAGCU--CGCUCGG---CCCGU- -5'
16500 3' -55.6 NC_004084.1 + 56797 0.67 0.616491
Target:  5'- -gGUCGgccuccucgaggagUUCAUCGAGCagagcucccAGCCGGGCGa -3'
miRNA:   3'- gaUAGU--------------GAGUAGCUCGc--------UCGGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 14990 0.67 0.608812
Target:  5'- -gGUCGCUCAUCGAGuUGAcgaagaugcGCUGcGGCu -3'
miRNA:   3'- gaUAGUGAGUAGCUC-GCU---------CGGC-CCGu -5'
16500 3' -55.6 NC_004084.1 + 1656 0.68 0.586934
Target:  5'- --cUCGCUCGUCaucauGGGCucGUCGGGCGa -3'
miRNA:   3'- gauAGUGAGUAG-----CUCGcuCGGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 53234 0.68 0.551195
Target:  5'- gUGUCAUcuacgagcgggcggUCGUCGAcgGCGAcgagaucggGCCGGGCGa -3'
miRNA:   3'- gAUAGUG--------------AGUAGCU--CGCU---------CGGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 49843 0.69 0.543694
Target:  5'- -aAUCACUCGUCGAcgucGCGAGCgagauccGGCGa -3'
miRNA:   3'- gaUAGUGAGUAGCU----CGCUCGgc-----CCGU- -5'
16500 3' -55.6 NC_004084.1 + 9041 0.69 0.511959
Target:  5'- -aAUCcCgCAUCGAGCggguaGAGUCGGGCGa -3'
miRNA:   3'- gaUAGuGaGUAGCUCG-----CUCGGCCCGU- -5'
16500 3' -55.6 NC_004084.1 + 30115 0.73 0.302972
Target:  5'- -cGUCGCUgGg-GAGCGGGCCGGGgAa -3'
miRNA:   3'- gaUAGUGAgUagCUCGCUCGGCCCgU- -5'
16500 3' -55.6 NC_004084.1 + 37571 0.76 0.1901
Target:  5'- -gAUCaACUCGUCGA-CGAGCCGaGGCAc -3'
miRNA:   3'- gaUAG-UGAGUAGCUcGCUCGGC-CCGU- -5'
16500 3' -55.6 NC_004084.1 + 57124 1.08 0.001035
Target:  5'- cCUAUCACUCAUCGAGCGAGCCGGGCAu -3'
miRNA:   3'- -GAUAGUGAGUAGCUCGCUCGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.