miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 3' -59.1 NC_004084.1 + 36167 0.67 0.55486
Target:  5'- aCGUCGACGUcCGgguugaguaacUCGGCGAGaugcguucgguaCUCGAGc -3'
miRNA:   3'- -GCAGCUGCA-GC-----------GGCCGCUC------------GAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 49073 0.67 0.55486
Target:  5'- cCGUCGACGUgCGaCGGuCGGGa--GAGGu -3'
miRNA:   3'- -GCAGCUGCA-GCgGCC-GCUCgagCUCC- -5'
16502 3' -59.1 NC_004084.1 + 4935 0.67 0.553837
Target:  5'- cCGUCGACGUacuggaugacgucCGCCGG-GAGaCgacgacccaCGAGGa -3'
miRNA:   3'- -GCAGCUGCA-------------GCGGCCgCUC-Ga--------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 35310 0.67 0.544655
Target:  5'- --cUGACGuUCGUCGGCuGGCUaucCGAGGu -3'
miRNA:   3'- gcaGCUGC-AGCGGCCGcUCGA---GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 8740 0.67 0.542621
Target:  5'- uCGUgGAUGUCGCCGGUccauucggagaucauGucgaccaccgcccacAGCUCGAGc -3'
miRNA:   3'- -GCAgCUGCAGCGGCCG---------------C---------------UCGAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 16588 0.67 0.538561
Target:  5'- -aUCGGCcUCGucacccccuacggacCCGGCGGGCuccUCGAGGu -3'
miRNA:   3'- gcAGCUGcAGC---------------GGCCGCUCG---AGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 17785 0.67 0.534512
Target:  5'- aCGUCGACGUUGCCcucuucagucguGaacGCGAGCUucacCGGGa -3'
miRNA:   3'- -GCAGCUGCAGCGG------------C---CGCUCGA----GCUCc -5'
16502 3' -59.1 NC_004084.1 + 2150 0.67 0.534512
Target:  5'- gGUCGACGUCGUacucguaGGCGAcaccaGCaCGGGa -3'
miRNA:   3'- gCAGCUGCAGCGg------CCGCU-----CGaGCUCc -5'
16502 3' -59.1 NC_004084.1 + 55992 0.67 0.533501
Target:  5'- uCGcCGAUGgcgagcaUCGCUGGCGAGC-CGccaAGGa -3'
miRNA:   3'- -GCaGCUGC-------AGCGGCCGCUCGaGC---UCC- -5'
16502 3' -59.1 NC_004084.1 + 41081 0.67 0.528457
Target:  5'- aCGUCGAcgagacgaugcgggcCGUCGCC-GCGGGa--GAGGa -3'
miRNA:   3'- -GCAGCU---------------GCAGCGGcCGCUCgagCUCC- -5'
16502 3' -59.1 NC_004084.1 + 213 0.67 0.52544
Target:  5'- aGUUGACccagcgaaGUCGaCCGGCGAGCgaugcacgcagccggCGaAGGg -3'
miRNA:   3'- gCAGCUG--------CAGC-GGCCGCUCGa--------------GC-UCC- -5'
16502 3' -59.1 NC_004084.1 + 10061 0.67 0.524435
Target:  5'- gGUCGAuCGUaCGUCGuaGAGCacgcCGAGGa -3'
miRNA:   3'- gCAGCU-GCA-GCGGCcgCUCGa---GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 29425 0.67 0.518424
Target:  5'- gGUUGcCGUCGaCGGCGAGCUucaccgcgaacgcggCGuGGg -3'
miRNA:   3'- gCAGCuGCAGCgGCCGCUCGA---------------GCuCC- -5'
16502 3' -59.1 NC_004084.1 + 10260 0.67 0.514432
Target:  5'- gGUCGGCGU--CCGGaucaCGAuGUUCGAGGg -3'
miRNA:   3'- gCAGCUGCAgcGGCC----GCU-CGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 52842 0.67 0.514432
Target:  5'- -cUCGGCGUucggCGCUGGCGAcCUCGAc- -3'
miRNA:   3'- gcAGCUGCA----GCGGCCGCUcGAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 18872 0.67 0.514432
Target:  5'- aGUCGAuCG-CGCUGGCcaucacgagGAGaucCUCGAGGa -3'
miRNA:   3'- gCAGCU-GCaGCGGCCG---------CUC---GAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 906 0.67 0.514432
Target:  5'- uGUCGGCGUCGUCGG--AGUUCGcugcGGc -3'
miRNA:   3'- gCAGCUGCAGCGGCCgcUCGAGCu---CC- -5'
16502 3' -59.1 NC_004084.1 + 21611 0.67 0.504508
Target:  5'- uCGUCGACGcUCGUCGagaaCGAagUCGAGGg -3'
miRNA:   3'- -GCAGCUGC-AGCGGCc---GCUcgAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 30411 0.68 0.494667
Target:  5'- aGcCGACGUCGacgggCGGCGAcggaaGCgauggCGAGGa -3'
miRNA:   3'- gCaGCUGCAGCg----GCCGCU-----CGa----GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 39601 0.68 0.494667
Target:  5'- cCGUCcuccugGACGUgGCCGGCGAcgucCUCGAc- -3'
miRNA:   3'- -GCAG------CUGCAgCGGCCGCUc---GAGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.