miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 5' -55.5 NC_004084.1 + 40345 0.68 0.596676
Target:  5'- -uCCUCGAAgggCGGC-ACAUCGACCGc -3'
miRNA:   3'- uuGGAGCUUga-GUCGcUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 20659 0.7 0.480314
Target:  5'- uGACCUCGAugaggagugGCUCGGCGAaga-GACCa -3'
miRNA:   3'- -UUGGAGCU---------UGAGUCGCUguggCUGGc -5'
16502 5' -55.5 NC_004084.1 + 22294 0.7 0.50076
Target:  5'- cACCUCGcgUUCGGCGAUgacgauacGCCG-CCGg -3'
miRNA:   3'- uUGGAGCuuGAGUCGCUG--------UGGCuGGC- -5'
16502 5' -55.5 NC_004084.1 + 5123 0.69 0.521581
Target:  5'- cGACCgUCGAuacaacCUCGGCGugG-CGACCGa -3'
miRNA:   3'- -UUGG-AGCUu-----GAGUCGCugUgGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 1797 0.69 0.532117
Target:  5'- gAGCCaCGAuC-CGGCGAacuCGCCGACCGg -3'
miRNA:   3'- -UUGGaGCUuGaGUCGCU---GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 7945 0.68 0.573869
Target:  5'- -cCCUC-AACaUCGGCGAacgacacCGCCGACCGc -3'
miRNA:   3'- uuGGAGcUUG-AGUCGCU-------GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 3817 0.68 0.574951
Target:  5'- cGACCUCGAuccaguCUUcGuCGACGCCGACg- -3'
miRNA:   3'- -UUGGAGCUu-----GAGuC-GCUGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 56916 0.68 0.579283
Target:  5'- cGGCUUCGAGCUCgagGGCGACGucuaccaggaggucgUCGAUCGc -3'
miRNA:   3'- -UUGGAGCUUGAG---UCGCUGU---------------GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 47158 0.68 0.596676
Target:  5'- uACCUCcuGCUCuacGGCGACugggauGCUGACCGg -3'
miRNA:   3'- uUGGAGcuUGAG---UCGCUG------UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 33039 0.7 0.460283
Target:  5'- cGACCUCGAcugACUCGGCGcucACGUCGAuCCGu -3'
miRNA:   3'- -UUGGAGCU---UGAGUCGC---UGUGGCU-GGC- -5'
16502 5' -55.5 NC_004084.1 + 16875 0.7 0.450435
Target:  5'- gGAUCUCGAGCgCGGCGuCugcuCCGAUCGa -3'
miRNA:   3'- -UUGGAGCUUGaGUCGCuGu---GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 46822 0.71 0.431093
Target:  5'- cGACCUgCGAcaACUgCGGCGACACCGuuCa -3'
miRNA:   3'- -UUGGA-GCU--UGA-GUCGCUGUGGCugGc -5'
16502 5' -55.5 NC_004084.1 + 37385 0.81 0.095521
Target:  5'- uGACUUCGAcgaACUCGGCaGACGCUGGCCGa -3'
miRNA:   3'- -UUGGAGCU---UGAGUCG-CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 9484 0.76 0.229093
Target:  5'- cACCUgGAGCUgaAGCccGGCGCCGACCGg -3'
miRNA:   3'- uUGGAgCUUGAg-UCG--CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 44670 0.73 0.334076
Target:  5'- cGACCUCGAG---GGCGA-GCCGACCGg -3'
miRNA:   3'- -UUGGAGCUUgagUCGCUgUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 57507 0.72 0.350474
Target:  5'- aGGCCgcagCGAACUCcGaCGACGCCGACa- -3'
miRNA:   3'- -UUGGa---GCUUGAGuC-GCUGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 35449 0.72 0.367436
Target:  5'- --aCUgGGACUgAGUGACAUCGACCa -3'
miRNA:   3'- uugGAgCUUGAgUCGCUGUGGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 32215 0.72 0.384955
Target:  5'- cGCCUCGAgauGCUCcucGaCGACGCCGACgGu -3'
miRNA:   3'- uUGGAGCU---UGAGu--C-GCUGUGGCUGgC- -5'
16502 5' -55.5 NC_004084.1 + 47651 0.72 0.393919
Target:  5'- cGGCgUCGAGgUCGGCGACGCCcccACUGg -3'
miRNA:   3'- -UUGgAGCUUgAGUCGCUGUGGc--UGGC- -5'
16502 5' -55.5 NC_004084.1 + 48152 0.71 0.412247
Target:  5'- -cCCUCGAACaUCGuGauccgGACGCCGACCGc -3'
miRNA:   3'- uuGGAGCUUG-AGU-Cg----CUGUGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.