miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16503 3' -58.9 NC_004084.1 + 33505 0.67 0.436313
Target:  5'- cGguGGCCGaacgaAGCGAGCUCUacuCGAg -3'
miRNA:   3'- uCguCCGGCg----UCGCUUGAGGcu-GCUg -5'
16503 3' -58.9 NC_004084.1 + 31705 0.7 0.316536
Target:  5'- gAGCGGGCCuCAGCGGcuaugACUacgccgauaUCGACGAUg -3'
miRNA:   3'- -UCGUCCGGcGUCGCU-----UGA---------GGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 31461 0.67 0.465194
Target:  5'- cAGCGGGCaauggauGCGGUGAGCgcguccgCCGucGCGAUg -3'
miRNA:   3'- -UCGUCCGg------CGUCGCUUGa------GGC--UGCUG- -5'
16503 3' -58.9 NC_004084.1 + 29168 0.66 0.52572
Target:  5'- cGCGGGCCGUucguccAGCGgAACUCgcccugcuCGGCGuCg -3'
miRNA:   3'- uCGUCCGGCG------UCGC-UUGAG--------GCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 29059 0.67 0.465194
Target:  5'- uGGCAGGCCGCGaccGCccGCUCgGG-GGCg -3'
miRNA:   3'- -UCGUCCGGCGU---CGcuUGAGgCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 28670 0.66 0.505178
Target:  5'- ----cGCCGCAGCGAGCUCaaCGuCGAg -3'
miRNA:   3'- ucgucCGGCGUCGCUUGAG--GCuGCUg -5'
16503 3' -58.9 NC_004084.1 + 28532 0.67 0.484989
Target:  5'- uGCGuGGCCGgGGaCGu-CUuuGACGACg -3'
miRNA:   3'- uCGU-CCGGCgUC-GCuuGAggCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 27785 0.68 0.408493
Target:  5'- cAGCAGcGUCGUcGCGAACUCguaGuCGGCg -3'
miRNA:   3'- -UCGUC-CGGCGuCGCUUGAGg--CuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 26733 0.73 0.186062
Target:  5'- cGCucGGCCcaCAGCGAACUucCCGACGGCc -3'
miRNA:   3'- uCGu-CCGGc-GUCGCUUGA--GGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 24021 0.67 0.455455
Target:  5'- cGGCGauGGaCGCGguuGCGGGCUCCcaGACGGCg -3'
miRNA:   3'- -UCGU--CCgGCGU---CGCUUGAGG--CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 23749 0.69 0.364675
Target:  5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3'
miRNA:   3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 23659 0.69 0.364675
Target:  5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3'
miRNA:   3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 23129 0.66 0.515408
Target:  5'- cAGCAGGCucuCGC-GCuGACUUCGcCGACu -3'
miRNA:   3'- -UCGUCCG---GCGuCGcUUGAGGCuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 22387 0.66 0.505178
Target:  5'- cAGgAGGUCGaacgcuacCGGaCGAucacgcuucucgGCUCCGACGACg -3'
miRNA:   3'- -UCgUCCGGC--------GUC-GCU------------UGAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 21681 0.69 0.364675
Target:  5'- uGCAGGuuGCGuuGCGAGCacagCUGACGuCg -3'
miRNA:   3'- uCGUCCggCGU--CGCUUGa---GGCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 19883 0.66 0.515408
Target:  5'- cGGCGGuGCCGcCGGUguagaacagGAACUUCGaACGAUg -3'
miRNA:   3'- -UCGUC-CGGC-GUCG---------CUUGAGGC-UGCUG- -5'
16503 3' -58.9 NC_004084.1 + 18558 0.66 0.505178
Target:  5'- gGGUGGGCCGaCGGgGAGaUCgCGACGGu -3'
miRNA:   3'- -UCGUCCGGC-GUCgCUUgAG-GCUGCUg -5'
16503 3' -58.9 NC_004084.1 + 16870 0.71 0.253583
Target:  5'- aAGUGGGaucucgagCGCGGCGucuGCUCCGAuCGACg -3'
miRNA:   3'- -UCGUCCg-------GCGUCGCu--UGAGGCU-GCUG- -5'
16503 3' -58.9 NC_004084.1 + 15272 0.71 0.266624
Target:  5'- gAGgAGGCgGCGGCaauaUCCGGCGGCu -3'
miRNA:   3'- -UCgUCCGgCGUCGcuugAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 13085 0.66 0.52572
Target:  5'- cGCAGa--GCAGCGAaaccuACUCCGgcACGGCu -3'
miRNA:   3'- uCGUCcggCGUCGCU-----UGAGGC--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.