miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16503 3' -58.9 NC_004084.1 + 18558 0.66 0.505178
Target:  5'- gGGUGGGCCGaCGGgGAGaUCgCGACGGu -3'
miRNA:   3'- -UCGUCCGGC-GUCgCUUgAG-GCUGCUg -5'
16503 3' -58.9 NC_004084.1 + 22387 0.66 0.505178
Target:  5'- cAGgAGGUCGaacgcuacCGGaCGAucacgcuucucgGCUCCGACGACg -3'
miRNA:   3'- -UCgUCCGGC--------GUC-GCU------------UGAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 13085 0.66 0.52572
Target:  5'- cGCAGa--GCAGCGAaaccuACUCCGgcACGGCu -3'
miRNA:   3'- uCGUCcggCGUCGCU-----UGAGGC--UGCUG- -5'
16503 3' -58.9 NC_004084.1 + 29059 0.67 0.465194
Target:  5'- uGGCAGGCCGCGaccGCccGCUCgGG-GGCg -3'
miRNA:   3'- -UCGUCCGGCGU---CGcuUGAGgCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 24021 0.67 0.455455
Target:  5'- cGGCGauGGaCGCGguuGCGGGCUCCcaGACGGCg -3'
miRNA:   3'- -UCGU--CCgGCGU---CGCUUGAGG--CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 1783 0.73 0.214245
Target:  5'- gAGguGGUCGUucugagccacgauccGGCGAACUcgccgaCCGGCGACg -3'
miRNA:   3'- -UCguCCGGCG---------------UCGCUUGA------GGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 7590 0.72 0.229666
Target:  5'- cGCAGGCaucgggccacagccaGCAGCuGGACUaCGACGGCg -3'
miRNA:   3'- uCGUCCGg--------------CGUCG-CUUGAgGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 16870 0.71 0.253583
Target:  5'- aAGUGGGaucucgagCGCGGCGucuGCUCCGAuCGACg -3'
miRNA:   3'- -UCGUCCg-------GCGUCGCu--UGAGGCU-GCUG- -5'
16503 3' -58.9 NC_004084.1 + 52030 0.7 0.287195
Target:  5'- gAGCAGGCUG-AGCGAGCggUCuACGGCg -3'
miRNA:   3'- -UCGUCCGGCgUCGCUUGa-GGcUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 5104 0.7 0.316536
Target:  5'- aGGCGGGCCGcCAGCuGGCcgaCCGuCGAUa -3'
miRNA:   3'- -UCGUCCGGC-GUCGcUUGa--GGCuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 45509 0.69 0.348082
Target:  5'- uGGcCGGGCCGguCGGCc-ACUCCGAgGACg -3'
miRNA:   3'- -UC-GUCCGGC--GUCGcuUGAGGCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 57529 0.69 0.348082
Target:  5'- ----cGCCGaCAGCGAuaccgAUUCCGACGGCg -3'
miRNA:   3'- ucgucCGGC-GUCGCU-----UGAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 21681 0.69 0.364675
Target:  5'- uGCAGGuuGCGuuGCGAGCacagCUGACGuCg -3'
miRNA:   3'- uCGUCCggCGU--CGCUUGa---GGCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 23659 0.69 0.364675
Target:  5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3'
miRNA:   3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 40446 0.68 0.381808
Target:  5'- --gAGGCCGagGGCG-ACaCCGACGACg -3'
miRNA:   3'- ucgUCCGGCg-UCGCuUGaGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 55554 0.68 0.381808
Target:  5'- uGGCuGGCCGCGaCGAACU-CGuCGGCc -3'
miRNA:   3'- -UCGuCCGGCGUcGCUUGAgGCuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 43768 0.68 0.396787
Target:  5'- cGCGGGCaucgacugggcgcuCGcCGGCGGAgagUCCGGCGGCg -3'
miRNA:   3'- uCGUCCG--------------GC-GUCGCUUg--AGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 35474 0.68 0.408493
Target:  5'- gAGCAGGUCgagGCGGCGAucgCCGAgauccCGACc -3'
miRNA:   3'- -UCGUCCGG---CGUCGCUugaGGCU-----GCUG- -5'
16503 3' -58.9 NC_004084.1 + 10386 0.67 0.44487
Target:  5'- gAGCAGGCgaucgagCGCGaaGAACUCCG-CGAg -3'
miRNA:   3'- -UCGUCCG-------GCGUcgCUUGAGGCuGCUg -5'
16503 3' -58.9 NC_004084.1 + 685 0.67 0.445827
Target:  5'- gAGCAGGCCGCGGgUGAgucGCga-GAUGAg -3'
miRNA:   3'- -UCGUCCGGCGUC-GCU---UGaggCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.