Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16503 | 3' | -58.9 | NC_004084.1 | + | 29059 | 0.67 | 0.465194 |
Target: 5'- uGGCAGGCCGCGaccGCccGCUCgGG-GGCg -3' miRNA: 3'- -UCGUCCGGCGU---CGcuUGAGgCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 24021 | 0.67 | 0.455455 |
Target: 5'- cGGCGauGGaCGCGguuGCGGGCUCCcaGACGGCg -3' miRNA: 3'- -UCGU--CCgGCGU---CGCUUGAGG--CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7170 | 0.67 | 0.445827 |
Target: 5'- gGGUcGGUCGCAGCGA--UCCgGACGuCg -3' miRNA: 3'- -UCGuCCGGCGUCGCUugAGG-CUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 685 | 0.67 | 0.445827 |
Target: 5'- gAGCAGGCCGCGGgUGAgucGCga-GAUGAg -3' miRNA: 3'- -UCGUCCGGCGUC-GCU---UGaggCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 10386 | 0.67 | 0.44487 |
Target: 5'- gAGCAGGCgaucgagCGCGaaGAACUCCG-CGAg -3' miRNA: 3'- -UCGUCCG-------GCGUcgCUUGAGGCuGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 33505 | 0.67 | 0.436313 |
Target: 5'- cGguGGCCGaacgaAGCGAGCUCUacuCGAg -3' miRNA: 3'- uCguCCGGCg----UCGCUUGAGGcu-GCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 27785 | 0.68 | 0.408493 |
Target: 5'- cAGCAGcGUCGUcGCGAACUCguaGuCGGCg -3' miRNA: 3'- -UCGUC-CGGCGuCGCUUGAGg--CuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 35474 | 0.68 | 0.408493 |
Target: 5'- gAGCAGGUCgagGCGGCGAucgCCGAgauccCGACc -3' miRNA: 3'- -UCGUCCGG---CGUCGCUugaGGCU-----GCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 43768 | 0.68 | 0.396787 |
Target: 5'- cGCGGGCaucgacugggcgcuCGcCGGCGGAgagUCCGGCGGCg -3' miRNA: 3'- uCGUCCG--------------GC-GUCGCUUg--AGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 55554 | 0.68 | 0.381808 |
Target: 5'- uGGCuGGCCGCGaCGAACU-CGuCGGCc -3' miRNA: 3'- -UCGuCCGGCGUcGCUUGAgGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 40446 | 0.68 | 0.381808 |
Target: 5'- --gAGGCCGagGGCG-ACaCCGACGACg -3' miRNA: 3'- ucgUCCGGCg-UCGCuUGaGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 7359 | 0.68 | 0.381808 |
Target: 5'- cAGgAGG-CGCGGUucGCUCCGACGGu -3' miRNA: 3'- -UCgUCCgGCGUCGcuUGAGGCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 47383 | 0.68 | 0.380939 |
Target: 5'- cGCGucGUCGaCGGCGAGCUCCagggcgcGACGACg -3' miRNA: 3'- uCGUc-CGGC-GUCGCUUGAGG-------CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 42686 | 0.69 | 0.373175 |
Target: 5'- cGCgAGGCUGcCAGCGAucACcgaugCUGACGACc -3' miRNA: 3'- uCG-UCCGGC-GUCGCU--UGa----GGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 23749 | 0.69 | 0.364675 |
Target: 5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3' miRNA: 3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 21681 | 0.69 | 0.364675 |
Target: 5'- uGCAGGuuGCGuuGCGAGCacagCUGACGuCg -3' miRNA: 3'- uCGUCCggCGU--CGCUUGa---GGCUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 23659 | 0.69 | 0.364675 |
Target: 5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3' miRNA: 3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 45509 | 0.69 | 0.348082 |
Target: 5'- uGGcCGGGCCGguCGGCc-ACUCCGAgGACg -3' miRNA: 3'- -UC-GUCCGGC--GUCGcuUGAGGCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 57529 | 0.69 | 0.348082 |
Target: 5'- ----cGCCGaCAGCGAuaccgAUUCCGACGGCg -3' miRNA: 3'- ucgucCGGC-GUCGCU-----UGAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 5104 | 0.7 | 0.316536 |
Target: 5'- aGGCGGGCCGcCAGCuGGCcgaCCGuCGAUa -3' miRNA: 3'- -UCGUCCGGC-GUCGcUUGa--GGCuGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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