miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16503 5' -53.5 NC_004084.1 + 40117 0.66 0.880872
Target:  5'- uCGAguccuaCGAggCCGACGGUGgccugaucggccucaACGUCGa -3'
miRNA:   3'- -GCUaug---GCUaaGGCUGCCGC---------------UGCAGC- -5'
16503 5' -53.5 NC_004084.1 + 10884 0.66 0.877865
Target:  5'- ---gGCCGGa--UGAUGGCGAuCGUCGg -3'
miRNA:   3'- gcuaUGGCUaagGCUGCCGCU-GCAGC- -5'
16503 5' -53.5 NC_004084.1 + 55845 0.66 0.877865
Target:  5'- gGAUGCCGucaaCGACGcG-GACGUCu -3'
miRNA:   3'- gCUAUGGCuaagGCUGC-CgCUGCAGc -5'
16503 5' -53.5 NC_004084.1 + 3598 0.66 0.870176
Target:  5'- ---gACCGuUUCCGcgaauaucGCGGgGGCGUCa -3'
miRNA:   3'- gcuaUGGCuAAGGC--------UGCCgCUGCAGc -5'
16503 5' -53.5 NC_004084.1 + 55981 0.66 0.862248
Target:  5'- gGAgggGCUGAUcgCCGAUGGCGAgCaUCGc -3'
miRNA:   3'- gCUa--UGGCUAa-GGCUGCCGCU-GcAGC- -5'
16503 5' -53.5 NC_004084.1 + 23221 0.66 0.862248
Target:  5'- aGAUGaguaaaauCUGGgaaCCGAgCGGUGGCGUCGa -3'
miRNA:   3'- gCUAU--------GGCUaa-GGCU-GCCGCUGCAGC- -5'
16503 5' -53.5 NC_004084.1 + 51243 0.66 0.862248
Target:  5'- uCGGUACUGAUa--GGCGGCuuCGUCa -3'
miRNA:   3'- -GCUAUGGCUAaggCUGCCGcuGCAGc -5'
16503 5' -53.5 NC_004084.1 + 21759 0.66 0.862248
Target:  5'- aCGGUuccACgGGgaUCGGCGGCaucGACGUCGg -3'
miRNA:   3'- -GCUA---UGgCUaaGGCUGCCG---CUGCAGC- -5'
16503 5' -53.5 NC_004084.1 + 17942 0.66 0.859823
Target:  5'- uGAcACCGGgacgUCCGAagaaaaaccgaugaCGGCGGaauCGUCGg -3'
miRNA:   3'- gCUaUGGCUa---AGGCU--------------GCCGCU---GCAGC- -5'
16503 5' -53.5 NC_004084.1 + 21978 0.66 0.854087
Target:  5'- gGAUACCcagGAUgucguacaggUCUG-CGGCGAuCGUCGa -3'
miRNA:   3'- gCUAUGG---CUA----------AGGCuGCCGCU-GCAGC- -5'
16503 5' -53.5 NC_004084.1 + 1802 0.66 0.854087
Target:  5'- aCGAU-CCGGcgaacucgCCGAcCGGCGACGaCGc -3'
miRNA:   3'- -GCUAuGGCUaa------GGCU-GCCGCUGCaGC- -5'
16503 5' -53.5 NC_004084.1 + 17837 0.66 0.854087
Target:  5'- aGAaGCCGAgcUCgaGACGGCcgaGAUGUCGg -3'
miRNA:   3'- gCUaUGGCUa-AGg-CUGCCG---CUGCAGC- -5'
16503 5' -53.5 NC_004084.1 + 17273 0.66 0.8457
Target:  5'- gCGAUGCCcucgguggaggcGGUggCGGCGGUGGCGgCGa -3'
miRNA:   3'- -GCUAUGG------------CUAagGCUGCCGCUGCaGC- -5'
16503 5' -53.5 NC_004084.1 + 7656 0.66 0.8457
Target:  5'- aCGAagaGCCGGa--CGACGGCGAaGUCa -3'
miRNA:   3'- -GCUa--UGGCUaagGCUGCCGCUgCAGc -5'
16503 5' -53.5 NC_004084.1 + 13131 0.66 0.8457
Target:  5'- gGAcGaaGAcUUCGACGGCGACGauUCGg -3'
miRNA:   3'- gCUaUggCUaAGGCUGCCGCUGC--AGC- -5'
16503 5' -53.5 NC_004084.1 + 40438 0.67 0.837096
Target:  5'- uCGAgAUCGAggCCGAgGGCGACa--- -3'
miRNA:   3'- -GCUaUGGCUaaGGCUgCCGCUGcagc -5'
16503 5' -53.5 NC_004084.1 + 54568 0.67 0.837096
Target:  5'- gGAcACCGAggUUCCGGUGGagccgucguCGGCGUCGa -3'
miRNA:   3'- gCUaUGGCU--AAGGCUGCC---------GCUGCAGC- -5'
16503 5' -53.5 NC_004084.1 + 58032 0.67 0.837096
Target:  5'- -----gCGAcaUCGGCGGCGACGUCc -3'
miRNA:   3'- gcuaugGCUaaGGCUGCCGCUGCAGc -5'
16503 5' -53.5 NC_004084.1 + 49915 0.67 0.837096
Target:  5'- aGAUuccuucGCUGGaUCCGGCGGCgcagGugGUCa -3'
miRNA:   3'- gCUA------UGGCUaAGGCUGCCG----CugCAGc -5'
16503 5' -53.5 NC_004084.1 + 48966 0.67 0.828283
Target:  5'- aCGAUGCCG---CCGACuaCGGCGUCc -3'
miRNA:   3'- -GCUAUGGCuaaGGCUGccGCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.