miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 21389 0.67 0.947149
Target:  5'- aCCGuGAGGCGgCGAUGAccggccuCGAUGAg -3'
miRNA:   3'- aGGCuUUUCGUgGCUACUu------GCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 3716 0.67 0.947149
Target:  5'- aUCCGGAAGcGUAUgGAcGAGCG-CGGCu -3'
miRNA:   3'- -AGGCUUUU-CGUGgCUaCUUGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6390 0.67 0.947149
Target:  5'- -aCG-AGAGCGCCGA-GGACcgaGAUGACu -3'
miRNA:   3'- agGCuUUUCGUGGCUaCUUG---CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 1051 0.67 0.951801
Target:  5'- uUCCGA--GGCAUC--UGGGCGAUGAa -3'
miRNA:   3'- -AGGCUuuUCGUGGcuACUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 23374 0.67 0.951801
Target:  5'- gCCGGuaucAGGCgaucAUCGAUGAGaugauCGACGACg -3'
miRNA:   3'- aGGCUu---UUCG----UGGCUACUU-----GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 52370 0.67 0.953582
Target:  5'- aCCGAccuGGUAUCGAauccacucgaagacaUGAuGCGGCGGCa -3'
miRNA:   3'- aGGCUuu-UCGUGGCU---------------ACU-UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 19436 0.67 0.936981
Target:  5'- uUCCGAuAAGGCGgcuugucgacUCGGUGAAUGugGGu -3'
miRNA:   3'- -AGGCU-UUUCGU----------GGCUACUUGCugCUg -5'
16505 5' -49.5 NC_004084.1 + 3456 0.67 0.931459
Target:  5'- gUCGGAucgcGAGCGCCGGgggaauacgGAACGGCGu- -3'
miRNA:   3'- aGGCUU----UUCGUGGCUa--------CUUGCUGCug -5'
16505 5' -49.5 NC_004084.1 + 55540 0.67 0.94221
Target:  5'- cUCCGcGAucGCGCUGGcUGGccGCGACGAa -3'
miRNA:   3'- -AGGC-UUuuCGUGGCU-ACU--UGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 4138 0.68 0.925643
Target:  5'- aCCGAGAAG-AUCGuccaGAACGAgGACu -3'
miRNA:   3'- aGGCUUUUCgUGGCua--CUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 49138 0.68 0.913131
Target:  5'- gCCGGAccAGGCGacguUCGAUgcguucacGAACGACGACc -3'
miRNA:   3'- aGGCUU--UUCGU----GGCUA--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 16125 0.68 0.899453
Target:  5'- gCCGAgacGAAGa--CGGUGAugGACGAa -3'
miRNA:   3'- aGGCU---UUUCgugGCUACUugCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 8693 0.68 0.913131
Target:  5'- cUCGAAGAGgAgaccucguaaCGGUGAACGAUGGCu -3'
miRNA:   3'- aGGCUUUUCgUg---------GCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 41813 0.68 0.913131
Target:  5'- cUCGAGGAGCccGCCGGguccguaggGggUGACGAg -3'
miRNA:   3'- aGGCUUUUCG--UGGCUa--------CuuGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 19380 0.68 0.913131
Target:  5'- cCCGAuc-GCAUCGAccUGGGCaGGCGAUg -3'
miRNA:   3'- aGGCUuuuCGUGGCU--ACUUG-CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7280 0.68 0.919534
Target:  5'- aCCGAGAu-CACC-AUGAGCaagGACGACa -3'
miRNA:   3'- aGGCUUUucGUGGcUACUUG---CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12905 0.68 0.919534
Target:  5'- cCUGgcGAGUacgACCGGacacUGGGCGACGAUg -3'
miRNA:   3'- aGGCuuUUCG---UGGCU----ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56065 0.68 0.919534
Target:  5'- cUUCGAGGA-CGaCGcgGAACGACGACu -3'
miRNA:   3'- -AGGCUUUUcGUgGCuaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 19623 0.68 0.925643
Target:  5'- gUCGggGAGCGaguuCCGGcucGACGACGAUg -3'
miRNA:   3'- aGGCuuUUCGU----GGCUac-UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 30715 0.68 0.925643
Target:  5'- gUCGAGGAGCugAUCGAUGGGCuguuCGACc -3'
miRNA:   3'- aGGCUUUUCG--UGGCUACUUGcu--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.