miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 6390 0.67 0.947149
Target:  5'- -aCG-AGAGCGCCGA-GGACcgaGAUGACu -3'
miRNA:   3'- agGCuUUUCGUGGCUaCUUG---CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 403 0.67 0.931459
Target:  5'- aCCGAGagcGAGCAggaGAUGAucgagagcgucuACGGCGACc -3'
miRNA:   3'- aGGCUU---UUCGUgg-CUACU------------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6101 0.67 0.931459
Target:  5'- gUCCGGAgaAAGUACC-AUG-ACGAUGAg -3'
miRNA:   3'- -AGGCUU--UUCGUGGcUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 49869 0.67 0.931459
Target:  5'- aUCCGgcGAGUcCUGcgGGACGAUGGg -3'
miRNA:   3'- -AGGCuuUUCGuGGCuaCUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 1745 0.67 0.936981
Target:  5'- aCCGAgacccgccgccGAAGUACCGAgcgGGGCcuGGCGAg -3'
miRNA:   3'- aGGCU-----------UUUCGUGGCUa--CUUG--CUGCUg -5'
16505 5' -49.5 NC_004084.1 + 7459 0.67 0.936981
Target:  5'- gUCCGAc-GGCGacUCGAgcGGCGACGGCg -3'
miRNA:   3'- -AGGCUuuUCGU--GGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 37041 0.67 0.941187
Target:  5'- cCCGAGcuGGCACCGAcgaagcggaaaacgcUGAAggcacuccucugugcCGAUGACg -3'
miRNA:   3'- aGGCUUu-UCGUGGCU---------------ACUU---------------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 21824 0.67 0.94221
Target:  5'- gUCGAcgguGAGGCGCuggaCGAUGcagggauuGGCGACGACg -3'
miRNA:   3'- aGGCU----UUUCGUG----GCUAC--------UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 53112 0.67 0.94221
Target:  5'- cUCGAcGGAGcCGCCGAgUGGAUGGCGGa -3'
miRNA:   3'- aGGCU-UUUC-GUGGCU-ACUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 55540 0.67 0.94221
Target:  5'- cUCCGcGAucGCGCUGGcUGGccGCGACGAa -3'
miRNA:   3'- -AGGC-UUuuCGUGGCU-ACU--UGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 21389 0.67 0.947149
Target:  5'- aCCGuGAGGCGgCGAUGAccggccuCGAUGAg -3'
miRNA:   3'- aGGCuUUUCGUgGCUACUu------GCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 3716 0.67 0.947149
Target:  5'- aUCCGGAAGcGUAUgGAcGAGCG-CGGCu -3'
miRNA:   3'- -AGGCUUUU-CGUGgCUaCUUGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 45078 0.66 0.970936
Target:  5'- aUCUGu--GGCG-CGAUGAACGACa-- -3'
miRNA:   3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5'
16505 5' -49.5 NC_004084.1 + 57631 0.66 0.970936
Target:  5'- cUCGAccaacacaAGGGCGaCGAUGAAuCGugGACg -3'
miRNA:   3'- aGGCU--------UUUCGUgGCUACUU-GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 45762 0.66 0.970936
Target:  5'- cUCGAucGGGaCGCCGAUGGaggucAUGugGGCg -3'
miRNA:   3'- aGGCUu-UUC-GUGGCUACU-----UGCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 57010 0.66 0.970936
Target:  5'- gCCGAGAauGGCgacGCCGGUGAuaaugagUGAUGAUa -3'
miRNA:   3'- aGGCUUU--UCG---UGGCUACUu------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48012 0.66 0.970936
Target:  5'- -gCGAGAuGGUcgaCGAccUGGACGACGACg -3'
miRNA:   3'- agGCUUU-UCGug-GCU--ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 33315 0.66 0.970936
Target:  5'- uUCCGcacuuGAcGCGCCGA---AUGACGACc -3'
miRNA:   3'- -AGGCu----UUuCGUGGCUacuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6234 0.66 0.970936
Target:  5'- uUCCGGAuAGCGUCGAUcccGAcGCGGuCGACg -3'
miRNA:   3'- -AGGCUUuUCGUGGCUA---CU-UGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 2262 0.66 0.970936
Target:  5'- cUCCGAAAgcuggaggagauGGgGCUGGUcGAcgcCGACGACa -3'
miRNA:   3'- -AGGCUUU------------UCgUGGCUA-CUu--GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.