Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 18991 | 0.78 | 0.388051 |
Target: 5'- cUCGAucaacGAAGCAUCGAgugaGGACGACGACg -3' miRNA: 3'- aGGCU-----UUUCGUGGCUa---CUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 20018 | 0.8 | 0.335093 |
Target: 5'- aUCCGAucGGCGCuCGA-GGACGACGAUc -3' miRNA: 3'- -AGGCUuuUCGUG-GCUaCUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 56977 | 0.81 | 0.287614 |
Target: 5'- gUCCGAgcgaagGAGGCgGCCGA-GGACGGCGACg -3' miRNA: 3'- -AGGCU------UUUCG-UGGCUaCUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 58180 | 1.11 | 0.003519 |
Target: 5'- cUCCGAAAAGCACCGAUGAACGACGACu -3' miRNA: 3'- -AGGCUUUUCGUGGCUACUUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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