miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 16926 0.66 0.967637
Target:  5'- gCCGGGugcgguucGGCAUCGgcGGGCGucGCGACg -3'
miRNA:   3'- aGGCUUu-------UCGUGGCuaCUUGC--UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 17954 0.74 0.642945
Target:  5'- gUCCGAAGAaaaACCGAUG-ACGGCGGa -3'
miRNA:   3'- -AGGCUUUUcg-UGGCUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 18991 0.78 0.388051
Target:  5'- cUCGAucaacGAAGCAUCGAgugaGGACGACGACg -3'
miRNA:   3'- aGGCU-----UUUCGUGGCUa---CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 19380 0.68 0.913131
Target:  5'- cCCGAuc-GCAUCGAccUGGGCaGGCGAUg -3'
miRNA:   3'- aGGCUuuuCGUGGCU--ACUUG-CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 19436 0.67 0.936981
Target:  5'- uUCCGAuAAGGCGgcuugucgacUCGGUGAAUGugGGu -3'
miRNA:   3'- -AGGCU-UUUCGU----------GGCUACUUGCugCUg -5'
16505 5' -49.5 NC_004084.1 + 19623 0.68 0.925643
Target:  5'- gUCGggGAGCGaguuCCGGcucGACGACGAUg -3'
miRNA:   3'- aGGCuuUUCGU----GGCUac-UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 20018 0.8 0.335093
Target:  5'- aUCCGAucGGCGCuCGA-GGACGACGAUc -3'
miRNA:   3'- -AGGCUuuUCGUG-GCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 21389 0.67 0.947149
Target:  5'- aCCGuGAGGCGgCGAUGAccggccuCGAUGAg -3'
miRNA:   3'- aGGCuUUUCGUgGCUACUu------GCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 21824 0.67 0.94221
Target:  5'- gUCGAcgguGAGGCGCuggaCGAUGcagggauuGGCGACGACg -3'
miRNA:   3'- aGGCU----UUUCGUG----GCUAC--------UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 23374 0.67 0.951801
Target:  5'- gCCGGuaucAGGCgaucAUCGAUGAGaugauCGACGACg -3'
miRNA:   3'- aGGCUu---UUCG----UGGCUACUU-----GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 25361 0.66 0.95617
Target:  5'- uUCCGAAAcGgAUCGAcgUGAGCGcCGAg -3'
miRNA:   3'- -AGGCUUUuCgUGGCU--ACUUGCuGCUg -5'
16505 5' -49.5 NC_004084.1 + 27262 0.66 0.970936
Target:  5'- cCCGGAuguCGCCGAaaggugUGAACGAUGuCg -3'
miRNA:   3'- aGGCUUuucGUGGCU------ACUUGCUGCuG- -5'
16505 5' -49.5 NC_004084.1 + 28795 0.66 0.967637
Target:  5'- gUCCGGAgccgacagccAGGUGCCGuuGUGGGCGagcaucGCGACc -3'
miRNA:   3'- -AGGCUU----------UUCGUGGC--UACUUGC------UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 29236 0.66 0.95617
Target:  5'- gCCGAgcAGGGCGaguuCCGcUGGACGaACGGCc -3'
miRNA:   3'- aGGCU--UUUCGU----GGCuACUUGC-UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 29744 0.74 0.631596
Target:  5'- aCCGGAGAGacCACCGgcGAGaCGAUGACc -3'
miRNA:   3'- aGGCUUUUC--GUGGCuaCUU-GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 30279 0.66 0.970936
Target:  5'- gCCGA--AGUAUCGA--GACGAgGACg -3'
miRNA:   3'- aGGCUuuUCGUGGCUacUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 30715 0.68 0.925643
Target:  5'- gUCGAGGAGCugAUCGAUGGGCuguuCGACc -3'
miRNA:   3'- aGGCUUUUCG--UGGCUACUUGcu--GCUG- -5'
16505 5' -49.5 NC_004084.1 + 32208 0.7 0.851758
Target:  5'- --aGAGGAGCGCCucgaGAUGcuccuCGACGACg -3'
miRNA:   3'- aggCUUUUCGUGG----CUACuu---GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 33315 0.66 0.970936
Target:  5'- uUCCGcacuuGAcGCGCCGA---AUGACGACc -3'
miRNA:   3'- -AGGCu----UUuCGUGGCUacuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 34338 0.66 0.964082
Target:  5'- gUCGAAGAGCGCacuucgCGGcaUGAugGACGcCg -3'
miRNA:   3'- aGGCUUUUCGUG------GCU--ACUugCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.