miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 46629 0.7 0.851758
Target:  5'- aCCGcAGAGGCuuCCGGUGGccCGACGAg -3'
miRNA:   3'- aGGC-UUUUCGu-GGCUACUu-GCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 45762 0.66 0.970936
Target:  5'- cUCGAucGGGaCGCCGAUGGaggucAUGugGGCg -3'
miRNA:   3'- aGGCUu-UUC-GUGGCUACU-----UGCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 45078 0.66 0.970936
Target:  5'- aUCUGu--GGCG-CGAUGAACGACa-- -3'
miRNA:   3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5'
16505 5' -49.5 NC_004084.1 + 44882 0.66 0.960262
Target:  5'- gCUGAgGAGGUACagguuuCGAUGAucccgGCGACGACc -3'
miRNA:   3'- aGGCU-UUUCGUG------GCUACU-----UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43809 0.72 0.721448
Target:  5'- -gCGAGGAGCGCCGGgagaugGAucauuCGugGGCg -3'
miRNA:   3'- agGCUUUUCGUGGCUa-----CUu----GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 43544 0.72 0.721448
Target:  5'- -aCGAAGcacGGCACCGA-GAcCGGCGGCc -3'
miRNA:   3'- agGCUUU---UCGUGGCUaCUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 42813 0.73 0.699306
Target:  5'- cCCGGu-GGaCGCCGGUGAuucCGAUGACg -3'
miRNA:   3'- aGGCUuuUC-GUGGCUACUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 41813 0.68 0.913131
Target:  5'- cUCGAGGAGCccGCCGGguccguaggGggUGACGAg -3'
miRNA:   3'- aGGCUUUUCG--UGGCUa--------CuuGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 39755 0.74 0.608909
Target:  5'- cUCCGAGGAGgcugaucccgaCGCCGAa-GACGGCGACg -3'
miRNA:   3'- -AGGCUUUUC-----------GUGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39702 0.71 0.805243
Target:  5'- aCCGAAcc-CGCCaGUGAcgGCGACGACg -3'
miRNA:   3'- aGGCUUuucGUGGcUACU--UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39352 0.66 0.95617
Target:  5'- aUCCGAAccuGC-CCGuucGUGAG-GACGACg -3'
miRNA:   3'- -AGGCUUuu-CGuGGC---UACUUgCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39300 0.74 0.597593
Target:  5'- aUCGucGAGCACCGAgaGGGCGAgGACu -3'
miRNA:   3'- aGGCuuUUCGUGGCUa-CUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 39191 0.7 0.842905
Target:  5'- --aGggGugccAGgGCCGAUGAcgcACGGCGACa -3'
miRNA:   3'- aggCuuU----UCgUGGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39129 0.7 0.828256
Target:  5'- cCCGGAGAGC-CUGAaGuauaaagcucgcgagGGCGACGACg -3'
miRNA:   3'- aGGCUUUUCGuGGCUaC---------------UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 38752 0.76 0.508935
Target:  5'- aCCagGGGAGGCAcguCCGAUGAcgcACGACGACc -3'
miRNA:   3'- aGG--CUUUUCGU---GGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 38720 0.66 0.959865
Target:  5'- gUCGAAgucguggGAGUGCuCGGUGAACG-CGAUg -3'
miRNA:   3'- aGGCUU-------UUCGUG-GCUACUUGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 38266 0.66 0.969973
Target:  5'- gCUGAGAcucaucaguGCACCGAaccUGAauacaucgcuacugACGGCGGCg -3'
miRNA:   3'- aGGCUUUu--------CGUGGCU---ACU--------------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 37041 0.67 0.941187
Target:  5'- cCCGAGcuGGCACCGAcgaagcggaaaacgcUGAAggcacuccucugugcCGAUGACg -3'
miRNA:   3'- aGGCUUu-UCGUGGCU---------------ACUU---------------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36619 0.74 0.608909
Target:  5'- aCgGAGAAGCGCCaGGUGAucggUGACGGCc -3'
miRNA:   3'- aGgCUUUUCGUGG-CUACUu---GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36530 0.66 0.970936
Target:  5'- aCCGAGA--CGCCGAUcgcgacaacGGuauCGACGACg -3'
miRNA:   3'- aGGCUUUucGUGGCUA---------CUu--GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.