miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 38752 0.76 0.508935
Target:  5'- aCCagGGGAGGCAcguCCGAUGAcgcACGACGACc -3'
miRNA:   3'- aGG--CUUUUCGU---GGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6865 0.77 0.45638
Target:  5'- aCCGAGAGGCGuuGAUGGcugGCcACGACg -3'
miRNA:   3'- aGGCUUUUCGUggCUACU---UGcUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 18991 0.78 0.388051
Target:  5'- cUCGAucaacGAAGCAUCGAgugaGGACGACGACg -3'
miRNA:   3'- aGGCU-----UUUCGUGGCUa---CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 20018 0.8 0.335093
Target:  5'- aUCCGAucGGCGCuCGA-GGACGACGAUc -3'
miRNA:   3'- -AGGCUuuUCGUG-GCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56977 0.81 0.287614
Target:  5'- gUCCGAgcgaagGAGGCgGCCGA-GGACGGCGACg -3'
miRNA:   3'- -AGGCU------UUUCG-UGGCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43544 0.72 0.721448
Target:  5'- -aCGAAGcacGGCACCGA-GAcCGGCGGCc -3'
miRNA:   3'- agGCUUU---UCGUGGCUaCUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43809 0.72 0.721448
Target:  5'- -gCGAGGAGCGCCGGgagaugGAucauuCGugGGCg -3'
miRNA:   3'- agGCUUUUCGUGGCUa-----CUu----GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 39191 0.7 0.842905
Target:  5'- --aGggGugccAGgGCCGAUGAcgcACGGCGACa -3'
miRNA:   3'- aggCuuU----UCgUGGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39129 0.7 0.828256
Target:  5'- cCCGGAGAGC-CUGAaGuauaaagcucgcgagGGCGACGACg -3'
miRNA:   3'- aGGCUUUUCGuGGCUaC---------------UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48875 0.7 0.814976
Target:  5'- cCCGggGcucGCGaCGAUGcACGACGGCa -3'
miRNA:   3'- aGGCuuUu--CGUgGCUACuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8934 0.7 0.814976
Target:  5'- aUCCGGAugaCGCCGAcGAcuccgaggacaGCGGCGACg -3'
miRNA:   3'- -AGGCUUuucGUGGCUaCU-----------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39702 0.71 0.805243
Target:  5'- aCCGAAcc-CGCCaGUGAcgGCGACGACg -3'
miRNA:   3'- aGGCUUuucGUGGcUACU--UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 2774 0.71 0.805243
Target:  5'- -gUGGAgcGCGCCGAUGggUGA-GACg -3'
miRNA:   3'- agGCUUuuCGUGGCUACuuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 12571 0.71 0.78521
Target:  5'- aCCGAAGacgGGCAagCGAUGAuCGAgGACg -3'
miRNA:   3'- aGGCUUU---UCGUg-GCUACUuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 1805 0.71 0.774934
Target:  5'- aUCCGGcgAAcuCGCCGAccGGCGACGACg -3'
miRNA:   3'- -AGGCU--UUucGUGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 11774 0.71 0.774934
Target:  5'- aCCGAGGAGgaACUGAgcGAUGGCGACa -3'
miRNA:   3'- aGGCUUUUCg-UGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56419 0.71 0.770779
Target:  5'- aUCCGuucagcacagcGGCACCGucgcGAACGACGAUc -3'
miRNA:   3'- -AGGCuuu--------UCGUGGCua--CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 16570 0.71 0.761342
Target:  5'- gCCGAucGGUGCCGcuuuccuacucgucgGAGCGGCGACu -3'
miRNA:   3'- aGGCUuuUCGUGGCua-------------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36222 0.72 0.753923
Target:  5'- cUCCGGucuccucgAGGGCaACCGGUGGGCGcuGCGAUc -3'
miRNA:   3'- -AGGCU--------UUUCG-UGGCUACUUGC--UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 57841 0.72 0.732384
Target:  5'- aCCGAAGAGCACau-----CGACGACa -3'
miRNA:   3'- aGGCUUUUCGUGgcuacuuGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.