Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 29236 | 0.66 | 0.95617 |
Target: 5'- gCCGAgcAGGGCGaguuCCGcUGGACGaACGGCc -3' miRNA: 3'- aGGCU--UUUCGU----GGCuACUUGC-UGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 25361 | 0.66 | 0.95617 |
Target: 5'- uUCCGAAAcGgAUCGAcgUGAGCGcCGAg -3' miRNA: 3'- -AGGCUUUuCgUGGCU--ACUUGCuGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 19436 | 0.67 | 0.936981 |
Target: 5'- uUCCGAuAAGGCGgcuugucgacUCGGUGAAUGugGGu -3' miRNA: 3'- -AGGCU-UUUCGU----------GGCUACUUGCugCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 3456 | 0.67 | 0.931459 |
Target: 5'- gUCGGAucgcGAGCGCCGGgggaauacgGAACGGCGu- -3' miRNA: 3'- aGGCUU----UUCGUGGCUa--------CUUGCUGCug -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 8354 | 0.68 | 0.913131 |
Target: 5'- uUUCG-AGAGCAaucgccacCCGGUGAGgGACGAg -3' miRNA: 3'- -AGGCuUUUCGU--------GGCUACUUgCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 48641 | 0.68 | 0.899453 |
Target: 5'- gUCGAAcGGCcgcaGCCGAUGAugGAagcgggcucauuCGACa -3' miRNA: 3'- aGGCUUuUCG----UGGCUACUugCU------------GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 35787 | 0.69 | 0.892185 |
Target: 5'- gCCG-GAGGCGCCGG-GAAgGACGcGCu -3' miRNA: 3'- aGGCuUUUCGUGGCUaCUUgCUGC-UG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 1670 | 0.69 | 0.868719 |
Target: 5'- cCCGAcgucGAGUGCUuGUGGACGAUGAUg -3' miRNA: 3'- aGGCUu---UUCGUGGcUACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 7540 | 0.7 | 0.842905 |
Target: 5'- cUCCGGAuuuAGGUcuacGCCGAUGAACcGuCGGCc -3' miRNA: 3'- -AGGCUU---UUCG----UGGCUACUUG-CuGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 55038 | 0.66 | 0.960262 |
Target: 5'- cUCGAGGAGCuccgccaucuucACCGGguUGAACGGUGGCc -3' miRNA: 3'- aGGCUUUUCG------------UGGCU--ACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 34338 | 0.66 | 0.964082 |
Target: 5'- gUCGAAGAGCGCacuucgCGGcaUGAugGACGcCg -3' miRNA: 3'- aGGCUUUUCGUG------GCU--ACUugCUGCuG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 30279 | 0.66 | 0.970936 |
Target: 5'- gCCGA--AGUAUCGA--GACGAgGACg -3' miRNA: 3'- aGGCUuuUCGUGGCUacUUGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 36530 | 0.66 | 0.970936 |
Target: 5'- aCCGAGA--CGCCGAUcgcgacaacGGuauCGACGACg -3' miRNA: 3'- aGGCUUUucGUGGCUA---------CUu--GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 27262 | 0.66 | 0.970936 |
Target: 5'- cCCGGAuguCGCCGAaaggugUGAACGAUGuCg -3' miRNA: 3'- aGGCUUuucGUGGCU------ACUUGCUGCuG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 36016 | 0.66 | 0.970617 |
Target: 5'- gCCGAGAAGCGugaucguCCGGU-AGCGuuCGACc -3' miRNA: 3'- aGGCUUUUCGU-------GGCUAcUUGCu-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 9717 | 0.66 | 0.967637 |
Target: 5'- gCCGA----CGCCGAUGc-CGGCGGCu -3' miRNA: 3'- aGGCUuuucGUGGCUACuuGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 16926 | 0.66 | 0.967637 |
Target: 5'- gCCGGGugcgguucGGCAUCGgcGGGCGucGCGACg -3' miRNA: 3'- aGGCUUu-------UCGUGGCuaCUUGC--UGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 12782 | 0.66 | 0.967637 |
Target: 5'- aUCCGAGA--CGCCGuc-GACGAcCGACa -3' miRNA: 3'- -AGGCUUUucGUGGCuacUUGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5039 | 0.66 | 0.967637 |
Target: 5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3' miRNA: 3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 3780 | 0.66 | 0.967637 |
Target: 5'- gCCGuu--GCGCgGGUuGACGACGAUu -3' miRNA: 3'- aGGCuuuuCGUGgCUAcUUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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