Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 5039 | 0.66 | 0.967637 |
Target: 5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3' miRNA: 3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 3780 | 0.66 | 0.967637 |
Target: 5'- gCCGuu--GCGCgGGUuGACGACGAUu -3' miRNA: 3'- aGGCuuuuCGUGgCUAcUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 34338 | 0.66 | 0.964082 |
Target: 5'- gUCGAAGAGCGCacuucgCGGcaUGAugGACGcCg -3' miRNA: 3'- aGGCUUUUCGUG------GCU--ACUugCUGCuG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 45078 | 0.66 | 0.970936 |
Target: 5'- aUCUGu--GGCG-CGAUGAACGACa-- -3' miRNA: 3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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