miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 29744 0.74 0.631596
Target:  5'- aCCGGAGAGacCACCGgcGAGaCGAUGACc -3'
miRNA:   3'- aGGCUUUUC--GUGGCuaCUU-GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8354 0.68 0.913131
Target:  5'- uUUCG-AGAGCAaucgccacCCGGUGAGgGACGAg -3'
miRNA:   3'- -AGGCuUUUCGU--------GGCUACUUgCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 36530 0.66 0.970936
Target:  5'- aCCGAGA--CGCCGAUcgcgacaacGGuauCGACGACg -3'
miRNA:   3'- aGGCUUUucGUGGCUA---------CUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 30279 0.66 0.970936
Target:  5'- gCCGA--AGUAUCGA--GACGAgGACg -3'
miRNA:   3'- aGGCUuuUCGUGGCUacUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 45078 0.66 0.970936
Target:  5'- aUCUGu--GGCG-CGAUGAACGACa-- -3'
miRNA:   3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5'
16505 5' -49.5 NC_004084.1 + 12530 0.75 0.575063
Target:  5'- aUCUcGAGAGCuuGCaGGUGAGCGACGACg -3'
miRNA:   3'- -AGGcUUUUCG--UGgCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 20018 0.8 0.335093
Target:  5'- aUCCGAucGGCGCuCGA-GGACGACGAUc -3'
miRNA:   3'- -AGGCUuuUCGUG-GCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 32208 0.7 0.851758
Target:  5'- --aGAGGAGCGCCucgaGAUGcuccuCGACGACg -3'
miRNA:   3'- aggCUUUUCGUGG----CUACuu---GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39191 0.7 0.842905
Target:  5'- --aGggGugccAGgGCCGAUGAcgcACGGCGACa -3'
miRNA:   3'- aggCuuU----UCgUGGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39129 0.7 0.828256
Target:  5'- cCCGGAGAGC-CUGAaGuauaaagcucgcgagGGCGACGACg -3'
miRNA:   3'- aGGCUUUUCGuGGCUaC---------------UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43544 0.72 0.721448
Target:  5'- -aCGAAGcacGGCACCGA-GAcCGGCGGCc -3'
miRNA:   3'- agGCUUU---UCGUGGCUaCUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7640 0.72 0.710418
Target:  5'- aCCGAGAAGaaCGCUGAcgaagagccGGACGACGGCg -3'
miRNA:   3'- aGGCUUUUC--GUGGCUa--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 42813 0.73 0.699306
Target:  5'- cCCGGu-GGaCGCCGGUGAuucCGAUGACg -3'
miRNA:   3'- aGGCUuuUC-GUGGCUACUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 16046 0.73 0.654284
Target:  5'- gUCCGAGGAcGCACuCGAUGAguggaACGA-GACa -3'
miRNA:   3'- -AGGCUUUU-CGUG-GCUACU-----UGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 38752 0.76 0.508935
Target:  5'- aCCagGGGAGGCAcguCCGAUGAcgcACGACGACc -3'
miRNA:   3'- aGG--CUUUUCGU---GGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12571 0.71 0.78521
Target:  5'- aCCGAAGacgGGCAagCGAUGAuCGAgGACg -3'
miRNA:   3'- aGGCUUU---UCGUg-GCUACUuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 2774 0.71 0.805243
Target:  5'- -gUGGAgcGCGCCGAUGggUGA-GACg -3'
miRNA:   3'- agGCUUuuCGUGGCUACuuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 39702 0.71 0.805243
Target:  5'- aCCGAAcc-CGCCaGUGAcgGCGACGACg -3'
miRNA:   3'- aGGCUUuucGUGGcUACU--UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8934 0.7 0.814976
Target:  5'- aUCCGGAugaCGCCGAcGAcuccgaggacaGCGGCGACg -3'
miRNA:   3'- -AGGCUUuucGUGGCUaCU-----------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48875 0.7 0.814976
Target:  5'- cCCGggGcucGCGaCGAUGcACGACGGCa -3'
miRNA:   3'- aGGCuuUu--CGUgGCUACuUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.