miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 6101 0.67 0.931459
Target:  5'- gUCCGGAgaAAGUACC-AUG-ACGAUGAg -3'
miRNA:   3'- -AGGCUU--UUCGUGGcUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 403 0.67 0.931459
Target:  5'- aCCGAGagcGAGCAggaGAUGAucgagagcgucuACGGCGACc -3'
miRNA:   3'- aGGCUU---UUCGUgg-CUACU------------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 23374 0.67 0.951801
Target:  5'- gCCGGuaucAGGCgaucAUCGAUGAGaugauCGACGACg -3'
miRNA:   3'- aGGCUu---UUCG----UGGCUACUU-----GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 2774 0.71 0.805243
Target:  5'- -gUGGAgcGCGCCGAUGggUGA-GACg -3'
miRNA:   3'- agGCUUuuCGUGGCUACuuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 38752 0.76 0.508935
Target:  5'- aCCagGGGAGGCAcguCCGAUGAcgcACGACGACc -3'
miRNA:   3'- aGG--CUUUUCGU---GGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12530 0.75 0.575063
Target:  5'- aUCUcGAGAGCuuGCaGGUGAGCGACGACg -3'
miRNA:   3'- -AGGcUUUUCG--UGgCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 17954 0.74 0.642945
Target:  5'- gUCCGAAGAaaaACCGAUG-ACGGCGGa -3'
miRNA:   3'- -AGGCUUUUcg-UGGCUACuUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 16046 0.73 0.654284
Target:  5'- gUCCGAGGAcGCACuCGAUGAguggaACGA-GACa -3'
miRNA:   3'- -AGGCUUUU-CGUG-GCUACU-----UGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 42813 0.73 0.699306
Target:  5'- cCCGGu-GGaCGCCGGUGAuucCGAUGACg -3'
miRNA:   3'- aGGCUuuUC-GUGGCUACUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7640 0.72 0.710418
Target:  5'- aCCGAGAAGaaCGCUGAcgaagagccGGACGACGGCg -3'
miRNA:   3'- aGGCUUUUC--GUGGCUa--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 43544 0.72 0.721448
Target:  5'- -aCGAAGcacGGCACCGA-GAcCGGCGGCc -3'
miRNA:   3'- agGCUUU---UCGUGGCUaCUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 1805 0.71 0.774934
Target:  5'- aUCCGGcgAAcuCGCCGAccGGCGACGACg -3'
miRNA:   3'- -AGGCU--UUucGUGGCUacUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12571 0.71 0.78521
Target:  5'- aCCGAAGacgGGCAagCGAUGAuCGAgGACg -3'
miRNA:   3'- aGGCUUU---UCGUg-GCUACUuGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 39702 0.71 0.805243
Target:  5'- aCCGAAcc-CGCCaGUGAcgGCGACGACg -3'
miRNA:   3'- aGGCUUuucGUGGcUACU--UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8934 0.7 0.814976
Target:  5'- aUCCGGAugaCGCCGAcGAcuccgaggacaGCGGCGACg -3'
miRNA:   3'- -AGGCUUuucGUGGCUaCU-----------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48875 0.7 0.814976
Target:  5'- cCCGggGcucGCGaCGAUGcACGACGGCa -3'
miRNA:   3'- aGGCuuUu--CGUgGCUACuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39129 0.7 0.828256
Target:  5'- cCCGGAGAGC-CUGAaGuauaaagcucgcgagGGCGACGACg -3'
miRNA:   3'- aGGCUUUUCGuGGCUaC---------------UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39191 0.7 0.842905
Target:  5'- --aGggGugccAGgGCCGAUGAcgcACGGCGACa -3'
miRNA:   3'- aggCuuU----UCgUGGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 32208 0.7 0.851758
Target:  5'- --aGAGGAGCGCCucgaGAUGcuccuCGACGACg -3'
miRNA:   3'- aggCUUUUCGUGG----CUACuu---GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 46629 0.7 0.851758
Target:  5'- aCCGcAGAGGCuuCCGGUGGccCGACGAg -3'
miRNA:   3'- aGGC-UUUUCGu-GGCUACUu-GCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.