miRNA display CGI


Results 61 - 80 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 12530 0.75 0.575063
Target:  5'- aUCUcGAGAGCuuGCaGGUGAGCGACGACg -3'
miRNA:   3'- -AGGcUUUUCG--UGgCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 38752 0.76 0.508935
Target:  5'- aCCagGGGAGGCAcguCCGAUGAcgcACGACGACc -3'
miRNA:   3'- aGG--CUUUUCGU---GGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 6865 0.77 0.45638
Target:  5'- aCCGAGAGGCGuuGAUGGcugGCcACGACg -3'
miRNA:   3'- aGGCUUUUCGUggCUACU---UGcUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39702 0.71 0.805243
Target:  5'- aCCGAAcc-CGCCaGUGAcgGCGACGACg -3'
miRNA:   3'- aGGCUUuucGUGGcUACU--UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 8934 0.7 0.814976
Target:  5'- aUCCGGAugaCGCCGAcGAcuccgaggacaGCGGCGACg -3'
miRNA:   3'- -AGGCUUuucGUGGCUaCU-----------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48875 0.7 0.814976
Target:  5'- cCCGggGcucGCGaCGAUGcACGACGGCa -3'
miRNA:   3'- aGGCuuUu--CGUgGCUACuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 4138 0.68 0.925643
Target:  5'- aCCGAGAAG-AUCGuccaGAACGAgGACu -3'
miRNA:   3'- aGGCUUUUCgUGGCua--CUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 19623 0.68 0.925643
Target:  5'- gUCGggGAGCGaguuCCGGcucGACGACGAUg -3'
miRNA:   3'- aGGCuuUUCGU----GGCUac-UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56065 0.68 0.919534
Target:  5'- cUUCGAGGA-CGaCGcgGAACGACGACu -3'
miRNA:   3'- -AGGCUUUUcGUgGCuaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12905 0.68 0.919534
Target:  5'- cCUGgcGAGUacgACCGGacacUGGGCGACGAUg -3'
miRNA:   3'- aGGCuuUUCG---UGGCU----ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 7280 0.68 0.919534
Target:  5'- aCCGAGAu-CACC-AUGAGCaagGACGACa -3'
miRNA:   3'- aGGCUUUucGUGGcUACUUG---CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 19380 0.68 0.913131
Target:  5'- cCCGAuc-GCAUCGAccUGGGCaGGCGAUg -3'
miRNA:   3'- aGGCUuuuCGUGGCU--ACUUG-CUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 49138 0.68 0.913131
Target:  5'- gCCGGAccAGGCGacguUCGAUgcguucacGAACGACGACc -3'
miRNA:   3'- aGGCUU--UUCGU----GGCUA--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 41813 0.68 0.913131
Target:  5'- cUCGAGGAGCccGCCGGguccguaggGggUGACGAg -3'
miRNA:   3'- aGGCUUUUCG--UGGCUa--------CuuGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 8693 0.68 0.913131
Target:  5'- cUCGAAGAGgAgaccucguaaCGGUGAACGAUGGCu -3'
miRNA:   3'- aGGCUUUUCgUg---------GCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 16125 0.68 0.899453
Target:  5'- gCCGAgacGAAGa--CGGUGAugGACGAa -3'
miRNA:   3'- aGGCU---UUUCgugGCUACUugCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 46629 0.7 0.851758
Target:  5'- aCCGcAGAGGCuuCCGGUGGccCGACGAg -3'
miRNA:   3'- aGGC-UUUUCGu-GGCUACUu-GCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 32208 0.7 0.851758
Target:  5'- --aGAGGAGCGCCucgaGAUGcuccuCGACGACg -3'
miRNA:   3'- aggCUUUUCGUGG----CUACuu---GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39191 0.7 0.842905
Target:  5'- --aGggGugccAGgGCCGAUGAcgcACGGCGACa -3'
miRNA:   3'- aggCuuU----UCgUGGCUACU---UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 39129 0.7 0.828256
Target:  5'- cCCGGAGAGC-CUGAaGuauaaagcucgcgagGGCGACGACg -3'
miRNA:   3'- aGGCUUUUCGuGGCUaC---------------UUGCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.