Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 56065 | 0.68 | 0.919534 |
Target: 5'- cUUCGAGGA-CGaCGcgGAACGACGACu -3' miRNA: 3'- -AGGCUUUUcGUgGCuaCUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 19623 | 0.68 | 0.925643 |
Target: 5'- gUCGggGAGCGaguuCCGGcucGACGACGAUg -3' miRNA: 3'- aGGCuuUUCGU----GGCUac-UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 4138 | 0.68 | 0.925643 |
Target: 5'- aCCGAGAAG-AUCGuccaGAACGAgGACu -3' miRNA: 3'- aGGCUUUUCgUGGCua--CUUGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 30715 | 0.68 | 0.925643 |
Target: 5'- gUCGAGGAGCugAUCGAUGGGCuguuCGACc -3' miRNA: 3'- aGGCUUUUCG--UGGCUACUUGcu--GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 403 | 0.67 | 0.931459 |
Target: 5'- aCCGAGagcGAGCAggaGAUGAucgagagcgucuACGGCGACc -3' miRNA: 3'- aGGCUU---UUCGUgg-CUACU------------UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 6101 | 0.67 | 0.931459 |
Target: 5'- gUCCGGAgaAAGUACC-AUG-ACGAUGAg -3' miRNA: 3'- -AGGCUU--UUCGUGGcUACuUGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 49869 | 0.67 | 0.931459 |
Target: 5'- aUCCGgcGAGUcCUGcgGGACGAUGGg -3' miRNA: 3'- -AGGCuuUUCGuGGCuaCUUGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 1745 | 0.67 | 0.936981 |
Target: 5'- aCCGAgacccgccgccGAAGUACCGAgcgGGGCcuGGCGAg -3' miRNA: 3'- aGGCU-----------UUUCGUGGCUa--CUUG--CUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 19380 | 0.68 | 0.913131 |
Target: 5'- cCCGAuc-GCAUCGAccUGGGCaGGCGAUg -3' miRNA: 3'- aGGCUuuuCGUGGCU--ACUUG-CUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 49138 | 0.68 | 0.913131 |
Target: 5'- gCCGGAccAGGCGacguUCGAUgcguucacGAACGACGACc -3' miRNA: 3'- aGGCUU--UUCGU----GGCUA--------CUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 32208 | 0.7 | 0.851758 |
Target: 5'- --aGAGGAGCGCCucgaGAUGcuccuCGACGACg -3' miRNA: 3'- aggCUUUUCGUGG----CUACuu---GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 46629 | 0.7 | 0.851758 |
Target: 5'- aCCGcAGAGGCuuCCGGUGGccCGACGAg -3' miRNA: 3'- aGGC-UUUUCGu-GGCUACUu-GCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5163 | 0.69 | 0.860365 |
Target: 5'- cCUGAGGcAGCACuCGAgucGAuCGACGACu -3' miRNA: 3'- aGGCUUU-UCGUG-GCUa--CUuGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 10410 | 0.69 | 0.860365 |
Target: 5'- cUCCGcGAGGUggACUGAUGGuCGAgGACg -3' miRNA: 3'- -AGGCuUUUCG--UGGCUACUuGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 57530 | 0.69 | 0.884636 |
Target: 5'- gCCGAc-AGCgauACCGAUuccGACGGCGACg -3' miRNA: 3'- aGGCUuuUCG---UGGCUAc--UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5013 | 0.69 | 0.892185 |
Target: 5'- aUCCGAGAggggaucaacgGGCugAUCGA-GGAUGGCGACu -3' miRNA: 3'- -AGGCUUU-----------UCG--UGGCUaCUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 56180 | 0.68 | 0.898022 |
Target: 5'- aCCGAGGAGaucuccgcgcugGCCGAagcGAGCGGCGAg -3' miRNA: 3'- aGGCUUUUCg-----------UGGCUa--CUUGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 16125 | 0.68 | 0.899453 |
Target: 5'- gCCGAgacGAAGa--CGGUGAugGACGAa -3' miRNA: 3'- aGGCU---UUUCgugGCUACUugCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 8693 | 0.68 | 0.913131 |
Target: 5'- cUCGAAGAGgAgaccucguaaCGGUGAACGAUGGCu -3' miRNA: 3'- aGGCUUUUCgUg---------GCUACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 41813 | 0.68 | 0.913131 |
Target: 5'- cUCGAGGAGCccGCCGGguccguaggGggUGACGAg -3' miRNA: 3'- aGGCUUUUCG--UGGCUa--------CuuGCUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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