Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 5039 | 0.66 | 0.967637 |
Target: 5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3' miRNA: 3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 35205 | 0.66 | 0.964082 |
Target: 5'- cUCCGAAucGUcgggaucgaGCCGAcGAucGCGAuCGACg -3' miRNA: 3'- -AGGCUUuuCG---------UGGCUaCU--UGCU-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 34338 | 0.66 | 0.964082 |
Target: 5'- gUCGAAGAGCGCacuucgCGGcaUGAugGACGcCg -3' miRNA: 3'- aGGCUUUUCGUG------GCU--ACUugCUGCuG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 55348 | 0.66 | 0.963712 |
Target: 5'- aUCGAGAucGCGCCaaacagcaaggagGAUGA-CGACGAUg -3' miRNA: 3'- aGGCUUUu-CGUGG-------------CUACUuGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5346 | 0.66 | 0.960262 |
Target: 5'- gCCGAGcGGGCGgCGAggacugGGACGAucuCGACg -3' miRNA: 3'- aGGCUU-UUCGUgGCUa-----CUUGCU---GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 44882 | 0.66 | 0.960262 |
Target: 5'- gCUGAgGAGGUACagguuuCGAUGAucccgGCGACGACc -3' miRNA: 3'- aGGCU-UUUCGUG------GCUACU-----UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 55038 | 0.66 | 0.960262 |
Target: 5'- cUCGAGGAGCuccgccaucuucACCGGguUGAACGGUGGCc -3' miRNA: 3'- aGGCUUUUCG------------UGGCU--ACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 38720 | 0.66 | 0.959865 |
Target: 5'- gUCGAAgucguggGAGUGCuCGGUGAACG-CGAUg -3' miRNA: 3'- aGGCUU-------UUCGUG-GCUACUUGCuGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 29236 | 0.66 | 0.95617 |
Target: 5'- gCCGAgcAGGGCGaguuCCGcUGGACGaACGGCc -3' miRNA: 3'- aGGCU--UUUCGU----GGCuACUUGC-UGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 25361 | 0.66 | 0.95617 |
Target: 5'- uUCCGAAAcGgAUCGAcgUGAGCGcCGAg -3' miRNA: 3'- -AGGCUUUuCgUGGCU--ACUUGCuGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 39352 | 0.66 | 0.95617 |
Target: 5'- aUCCGAAccuGC-CCGuucGUGAG-GACGACg -3' miRNA: 3'- -AGGCUUuu-CGuGGC---UACUUgCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 12707 | 0.66 | 0.955746 |
Target: 5'- aCCGAAAcuggggcGGCAUCGAucUGGAUGccCGACu -3' miRNA: 3'- aGGCUUU-------UCGUGGCU--ACUUGCu-GCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 52370 | 0.67 | 0.953582 |
Target: 5'- aCCGAccuGGUAUCGAauccacucgaagacaUGAuGCGGCGGCa -3' miRNA: 3'- aGGCUuu-UCGUGGCU---------------ACU-UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 23374 | 0.67 | 0.951801 |
Target: 5'- gCCGGuaucAGGCgaucAUCGAUGAGaugauCGACGACg -3' miRNA: 3'- aGGCUu---UUCG----UGGCUACUU-----GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 1051 | 0.67 | 0.951801 |
Target: 5'- uUCCGA--GGCAUC--UGGGCGAUGAa -3' miRNA: 3'- -AGGCUuuUCGUGGcuACUUGCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 6390 | 0.67 | 0.947149 |
Target: 5'- -aCG-AGAGCGCCGA-GGACcgaGAUGACu -3' miRNA: 3'- agGCuUUUCGUGGCUaCUUG---CUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 21389 | 0.67 | 0.947149 |
Target: 5'- aCCGuGAGGCGgCGAUGAccggccuCGAUGAg -3' miRNA: 3'- aGGCuUUUCGUgGCUACUu------GCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 3716 | 0.67 | 0.947149 |
Target: 5'- aUCCGGAAGcGUAUgGAcGAGCG-CGGCu -3' miRNA: 3'- -AGGCUUUU-CGUGgCUaCUUGCuGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 21824 | 0.67 | 0.94221 |
Target: 5'- gUCGAcgguGAGGCGCuggaCGAUGcagggauuGGCGACGACg -3' miRNA: 3'- aGGCU----UUUCGUG----GCUAC--------UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 55540 | 0.67 | 0.94221 |
Target: 5'- cUCCGcGAucGCGCUGGcUGGccGCGACGAa -3' miRNA: 3'- -AGGC-UUuuCGUGGCU-ACU--UGCUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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