miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16506 3' -51.5 NC_004084.1 + 21158 0.66 0.878467
Target:  5'- uGUCGAGAgCGaGUccucGACGAGCGCcGgGACg -3'
miRNA:   3'- -UAGCUCU-GC-CG----UUGUUCGUGuUgCUG- -5'
16506 3' -51.5 NC_004084.1 + 32640 0.66 0.873659
Target:  5'- -aCGAGACGGuCGuugaaacaacuaaaaGCGAGCuu-GCGGCa -3'
miRNA:   3'- uaGCUCUGCC-GU---------------UGUUCGuguUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 46722 0.66 0.870399
Target:  5'- -aCGAG-UGGUcgGGCGAGCACAuCGAUc -3'
miRNA:   3'- uaGCUCuGCCG--UUGUUCGUGUuGCUG- -5'
16506 3' -51.5 NC_004084.1 + 445 0.66 0.870399
Target:  5'- cUCGAGACGGCG--GAGgACGcccAgGACg -3'
miRNA:   3'- uAGCUCUGCCGUugUUCgUGU---UgCUG- -5'
16506 3' -51.5 NC_004084.1 + 51454 0.66 0.870399
Target:  5'- -gCGAGggccGCGGCGGCuguacGgGCGACGACc -3'
miRNA:   3'- uaGCUC----UGCCGUUGuu---CgUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 16435 0.66 0.870399
Target:  5'- cGUCGAuGugGGCAucgguuACGGGCAUGggcGCGAg -3'
miRNA:   3'- -UAGCU-CugCCGU------UGUUCGUGU---UGCUg -5'
16506 3' -51.5 NC_004084.1 + 6590 0.66 0.869578
Target:  5'- uUCGAGAgUGGCGACAgucggcgGGCGCGGagguagGACu -3'
miRNA:   3'- uAGCUCU-GCCGUUGU-------UCGUGUUg-----CUG- -5'
16506 3' -51.5 NC_004084.1 + 45639 0.67 0.853478
Target:  5'- gGUCGucGACGGCGucuCGgauGCcgACAACGACg -3'
miRNA:   3'- -UAGCu-CUGCCGUu--GUu--CG--UGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 11841 0.67 0.853478
Target:  5'- aAUCGccuGACGGCGAuauCGAGUucacgacCGACGACg -3'
miRNA:   3'- -UAGCu--CUGCCGUU---GUUCGu------GUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 51734 0.67 0.84464
Target:  5'- cUCGAGAUGGaCGucguCGAGCAgcgccgaAGCGACu -3'
miRNA:   3'- uAGCUCUGCC-GUu---GUUCGUg------UUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 39698 0.67 0.841942
Target:  5'- cUCGAccgaacccgccaguGACGGCGACGAcGCcguCGACGAg -3'
miRNA:   3'- uAGCU--------------CUGCCGUUGUU-CGu--GUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 57686 0.67 0.835564
Target:  5'- -aCGAGGCGGCGuauauCGAGgGacgaGACGAUg -3'
miRNA:   3'- uaGCUCUGCCGUu----GUUCgUg---UUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 35479 0.67 0.835564
Target:  5'- gGUCGAGGCGGCGAucgcCGAGaucccgacCAACGGu -3'
miRNA:   3'- -UAGCUCUGCCGUU----GUUCgu------GUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 20284 0.67 0.832795
Target:  5'- cAUCGAGuucaacccgagcucGgGGCAACAGGC-CAucauCGACa -3'
miRNA:   3'- -UAGCUC--------------UgCCGUUGUUCGuGUu---GCUG- -5'
16506 3' -51.5 NC_004084.1 + 52905 0.67 0.820568
Target:  5'- cUCGAGGCcaagcaggaggucgaGGCAuacgcCGAGCGCGucACGACc -3'
miRNA:   3'- uAGCUCUG---------------CCGUu----GUUCGUGU--UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 54043 0.67 0.816733
Target:  5'- -aCGAGgACGGCuACGGuuggacGCGCGACGAg -3'
miRNA:   3'- uaGCUC-UGCCGuUGUU------CGUGUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 19678 0.67 0.816733
Target:  5'- uUCGucGACGGCAucgcguucacCGAGCACucccACGACu -3'
miRNA:   3'- uAGCu-CUGCCGUu---------GUUCGUGu---UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 327 0.67 0.816733
Target:  5'- --gGGGcGCGGCGAcCAGGacgGCAACGACa -3'
miRNA:   3'- uagCUC-UGCCGUU-GUUCg--UGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 8155 0.67 0.815769
Target:  5'- cGUCGAGgaccucgccgccaACGGCGACGAGgACGcagAgGACu -3'
miRNA:   3'- -UAGCUC-------------UGCCGUUGUUCgUGU---UgCUG- -5'
16506 3' -51.5 NC_004084.1 + 44821 0.68 0.807
Target:  5'- gGUCGGuGACGGUAuCGAGCugAcCGAg -3'
miRNA:   3'- -UAGCU-CUGCCGUuGUUCGugUuGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.