miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 157447 0.66 0.966993
Target:  5'- --gGUGACGGCGCucuuUCAGCGuaUgGUu -3'
miRNA:   3'- aaaCGCUGCCGUGu---AGUCGUcgAgCG- -5'
1651 3' -54.9 NC_001347.2 + 136286 0.66 0.966993
Target:  5'- --cGCcGCGGCcCAUgccCGGCacggGGCUCGCg -3'
miRNA:   3'- aaaCGcUGCCGuGUA---GUCG----UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 39681 0.66 0.966993
Target:  5'- --aGCGACGuGCACGgc-GCGuGCUgGCg -3'
miRNA:   3'- aaaCGCUGC-CGUGUaguCGU-CGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 143034 0.66 0.963765
Target:  5'- --aGCGGCGGCaACAgcuUCGGgAGCagaaccCGCg -3'
miRNA:   3'- aaaCGCUGCCG-UGU---AGUCgUCGa-----GCG- -5'
1651 3' -54.9 NC_001347.2 + 170066 0.66 0.963765
Target:  5'- --gGUGGCGGCGuCGUCAGuUGGCgucccgagUCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GUAGUC-GUCG--------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 77934 0.66 0.963765
Target:  5'- -gUGCGcucggaGCGGCugGagGcGCAGCUgCGCg -3'
miRNA:   3'- aaACGC------UGCCGugUagU-CGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 39957 0.66 0.963765
Target:  5'- --gGCGACGGCgaauaaaaGCGaCGuGCGGCgCGCa -3'
miRNA:   3'- aaaCGCUGCCG--------UGUaGU-CGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 106402 0.66 0.963765
Target:  5'- --cGCcgGACGaGCugGacaaguaCAGCGGCUCGCc -3'
miRNA:   3'- aaaCG--CUGC-CGugUa------GUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 196026 0.66 0.963765
Target:  5'- cUUUGgGACGcGCACccauuacuugCGGCAGCUaUGCu -3'
miRNA:   3'- -AAACgCUGC-CGUGua--------GUCGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 209088 0.66 0.962414
Target:  5'- --gGCGAacgcaccaccggaGGCGCAUCgaGGCAGCaguugccccacUCGCu -3'
miRNA:   3'- aaaCGCUg------------CCGUGUAG--UCGUCG-----------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 172031 0.66 0.960322
Target:  5'- gUUGCcGCGGCucucCAUCGcCAGCgCGCg -3'
miRNA:   3'- aAACGcUGCCGu---GUAGUcGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 191990 0.66 0.960322
Target:  5'- --aGCGGCGGCgACGgaCGGCGGCg-GUa -3'
miRNA:   3'- aaaCGCUGCCG-UGUa-GUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 56154 0.66 0.95666
Target:  5'- --aGCGACucauGGuCGC-UCGGCAGCUCcuuGCu -3'
miRNA:   3'- aaaCGCUG----CC-GUGuAGUCGUCGAG---CG- -5'
1651 3' -54.9 NC_001347.2 + 229690 0.66 0.95666
Target:  5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3'
miRNA:   3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 211 0.66 0.95666
Target:  5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3'
miRNA:   3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 149877 0.66 0.95666
Target:  5'- gUUGCcuACGGCGCAg-GGCGGC-CGUu -3'
miRNA:   3'- aAACGc-UGCCGUGUagUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 36718 0.66 0.952775
Target:  5'- --aGUGGCGGCAg--CAGguGCaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCguCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 22519 0.66 0.952775
Target:  5'- uUUUGCGGagaaaGGCGCGUCAuCGGUcugUCGUu -3'
miRNA:   3'- -AAACGCUg----CCGUGUAGUcGUCG---AGCG- -5'
1651 3' -54.9 NC_001347.2 + 100957 0.66 0.952775
Target:  5'- --cGCGAUGGagaaCugGUCGGC-GCUCGa -3'
miRNA:   3'- aaaCGCUGCC----GugUAGUCGuCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 87287 0.66 0.952775
Target:  5'- -cUGaaaGACGGcCACA-CAGC-GCUCGUu -3'
miRNA:   3'- aaACg--CUGCC-GUGUaGUCGuCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.