miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 171595 0.67 0.934927
Target:  5'- -gUGCaGCGGCugA-CGGUgaacguGGCUCGCu -3'
miRNA:   3'- aaACGcUGCCGugUaGUCG------UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 37935 0.67 0.934927
Target:  5'- --cGCGGCGcGCGgGUgCAGguGCagCGCg -3'
miRNA:   3'- aaaCGCUGC-CGUgUA-GUCguCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 1875 0.67 0.929877
Target:  5'- -gUGCGuCGGCACcugaaccagcGUCugugcuGCGGCUgGCu -3'
miRNA:   3'- aaACGCuGCCGUG----------UAGu-----CGUCGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 100140 0.67 0.929877
Target:  5'- cUUGCGGacGCACGUUgaguccaaagAGCAGCUUGUa -3'
miRNA:   3'- aAACGCUgcCGUGUAG----------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 34319 0.67 0.929877
Target:  5'- gUUGaCGugGGCggcgaugagaACGUCAGCGGUg-GCg -3'
miRNA:   3'- aAAC-GCugCCG----------UGUAGUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 93240 0.67 0.929877
Target:  5'- --aGCGGCGGCACccCGGCucagacgaGGCguuagCGCc -3'
miRNA:   3'- aaaCGCUGCCGUGuaGUCG--------UCGa----GCG- -5'
1651 3' -54.9 NC_001347.2 + 90158 0.67 0.924589
Target:  5'- --aGCGACGGCAaaggcuuagCcGCGGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCGUgua------GuCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 144524 0.67 0.924589
Target:  5'- cUUUGaUGACGGCcaGCAaCAGCAGCaacaGCa -3'
miRNA:   3'- -AAAC-GCUGCCG--UGUaGUCGUCGag--CG- -5'
1651 3' -54.9 NC_001347.2 + 19165 0.67 0.93974
Target:  5'- --aGCGACGaGgACGagAGCGGC-CGCc -3'
miRNA:   3'- aaaCGCUGC-CgUGUagUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 20313 0.67 0.934432
Target:  5'- --aGaCGACGGUcgcugccACAgCAGCGGCgUCGCc -3'
miRNA:   3'- aaaC-GCUGCCG-------UGUaGUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 31526 0.67 0.948662
Target:  5'- -aUGUGGCuccgccGGCACGUCAGU--UUCGCu -3'
miRNA:   3'- aaACGCUG------CCGUGUAGUCGucGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 1349 0.67 0.944318
Target:  5'- --cGCGACGGaccuGCGUCAacugucgccGCGGgaCGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGUAGU---------CGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 162675 0.67 0.942969
Target:  5'- --aGCGGuugGGCGCGUUgaucuaggcccaagAGCAGCUCGa -3'
miRNA:   3'- aaaCGCUg--CCGUGUAG--------------UCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 109474 0.67 0.93974
Target:  5'- --gGCGGCGGCGCcaUGGCGGg-CGCc -3'
miRNA:   3'- aaaCGCUGCCGUGuaGUCGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 173832 0.67 0.93974
Target:  5'- --gGCGGCGGCGgAggaggaggaggCGGCGGUuuggaUCGCa -3'
miRNA:   3'- aaaCGCUGCCGUgUa----------GUCGUCG-----AGCG- -5'
1651 3' -54.9 NC_001347.2 + 26781 0.67 0.93974
Target:  5'- --cGUGA-GcCACGUCAuccGCAGCUCGCu -3'
miRNA:   3'- aaaCGCUgCcGUGUAGU---CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 38014 0.67 0.93974
Target:  5'- --cGCG-CGGC-C-UCGGCGGCgggCGCc -3'
miRNA:   3'- aaaCGCuGCCGuGuAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 155130 0.67 0.934927
Target:  5'- -aUGaGGCGGcCGCcgCGGCGGCcagCGCu -3'
miRNA:   3'- aaACgCUGCC-GUGuaGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 47133 0.68 0.919064
Target:  5'- --gGCGGCGGCaaugGCcgCGGCAGCg--- -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGagcg -5'
1651 3' -54.9 NC_001347.2 + 160704 0.68 0.913302
Target:  5'- --cGCGAuCGGCGgcCGUCAGCuccuGCUgCGUg -3'
miRNA:   3'- aaaCGCU-GCCGU--GUAGUCGu---CGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.