miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 118800 0.68 0.907304
Target:  5'- --gGCGACGGUAgAUgucCAGguGCUuaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUgUA---GUCguCGA--GCG- -5'
1651 3' -54.9 NC_001347.2 + 93437 0.68 0.901072
Target:  5'- --cGCGcACGGCGCGaaUCAGCacguacucgacGGCgaugCGCg -3'
miRNA:   3'- aaaCGC-UGCCGUGU--AGUCG-----------UCGa---GCG- -5'
1651 3' -54.9 NC_001347.2 + 109536 0.68 0.906691
Target:  5'- --gGCGACGGCgugcACGUCGggcguuaugacacGCGGC-CGCc -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGU-------------CGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 153964 0.68 0.907304
Target:  5'- --cGCGGCGGUACAgcUCGcGCAGgaCGa -3'
miRNA:   3'- aaaCGCUGCCGUGU--AGU-CGUCgaGCg -5'
1651 3' -54.9 NC_001347.2 + 161740 0.68 0.901072
Target:  5'- --aGCGucACGGCGCucUCGaCAGCUUGCu -3'
miRNA:   3'- aaaCGC--UGCCGUGu-AGUcGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 154945 0.68 0.901072
Target:  5'- --gGCGACGGCuccGCcgCAGCuAGUgguguuggUCGCa -3'
miRNA:   3'- aaaCGCUGCCG---UGuaGUCG-UCG--------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 43662 0.68 0.89395
Target:  5'- --cGCGACaGGCGCGUCgagggGGCAGgaacaccCUUGCg -3'
miRNA:   3'- aaaCGCUG-CCGUGUAG-----UCGUC-------GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 128280 0.68 0.897869
Target:  5'- --gGCGACGGCGCcacugccgcugcgauUuccgacacggacuugCAGCGGCUCGUc -3'
miRNA:   3'- aaaCGCUGCCGUGu--------------A---------------GUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 158735 0.68 0.907304
Target:  5'- --gGCGcGCGGCGguUUAGCAGCg-GCu -3'
miRNA:   3'- aaaCGC-UGCCGUguAGUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 44037 0.68 0.913302
Target:  5'- --gGCGACGGCAg--CGGUGGUggCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 47133 0.68 0.919064
Target:  5'- --gGCGGCGGCaaugGCcgCGGCAGCg--- -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGagcg -5'
1651 3' -54.9 NC_001347.2 + 160704 0.68 0.913302
Target:  5'- --cGCGAuCGGCGgcCGUCAGCuccuGCUgCGUg -3'
miRNA:   3'- aaaCGCU-GCCGU--GUAGUCGu---CGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 27683 0.68 0.918498
Target:  5'- --cGCGAcgaacugcCGGCugcucagACGUUAcGCGGCUCGCu -3'
miRNA:   3'- aaaCGCU--------GCCG-------UGUAGU-CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 103614 0.68 0.913302
Target:  5'- -gUG-GGCGaGCACGUCaAGguGCUCGa -3'
miRNA:   3'- aaACgCUGC-CGUGUAG-UCguCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 38376 0.68 0.913302
Target:  5'- --cGCGcACGGCGCGUCcccgccGGCGGCcucCGUc -3'
miRNA:   3'- aaaCGC-UGCCGUGUAG------UCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 110523 0.68 0.913302
Target:  5'- --cGCGGCGGCGaagaaaAUCGGCcGCgaauggaagCGCg -3'
miRNA:   3'- aaaCGCUGCCGUg-----UAGUCGuCGa--------GCG- -5'
1651 3' -54.9 NC_001347.2 + 214012 0.68 0.913302
Target:  5'- --aGCGACGGCACGUaguuguGguGCUaaacugGCg -3'
miRNA:   3'- aaaCGCUGCCGUGUAgu----CguCGAg-----CG- -5'
1651 3' -54.9 NC_001347.2 + 82720 0.68 0.913302
Target:  5'- --gGUGGCGGUgguGCAgCGGCGGCUgaGCg -3'
miRNA:   3'- aaaCGCUGCCG---UGUaGUCGUCGAg-CG- -5'
1651 3' -54.9 NC_001347.2 + 36376 0.68 0.912712
Target:  5'- --gGCGGCaGGgGCAugcggccUUAGCGGCUCGg -3'
miRNA:   3'- aaaCGCUG-CCgUGU-------AGUCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 88648 0.68 0.901072
Target:  5'- --aGCGGCGGC-Cugc-GCAGCUuCGCg -3'
miRNA:   3'- aaaCGCUGCCGuGuaguCGUCGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.