miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 36376 0.68 0.912712
Target:  5'- --gGCGGCaGGgGCAugcggccUUAGCGGCUCGg -3'
miRNA:   3'- aaaCGCUG-CCgUGU-------AGUCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 173542 0.69 0.866518
Target:  5'- --gGCGGCGGCGgugguggCGGCAGCcucucuUCGCu -3'
miRNA:   3'- aaaCGCUGCCGUgua----GUCGUCG------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 158374 0.69 0.858959
Target:  5'- -gUGCGGCaGCGCGUCuacgAGCUCGUc -3'
miRNA:   3'- aaACGCUGcCGUGUAGucg-UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 100187 0.69 0.858959
Target:  5'- -aUGCG-CGGCGCcgCGGC--CUCGCc -3'
miRNA:   3'- aaACGCuGCCGUGuaGUCGucGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 139453 0.69 0.851195
Target:  5'- -gUGCGACuGCACggCGGCgaGGCggugCGCg -3'
miRNA:   3'- aaACGCUGcCGUGuaGUCG--UCGa---GCG- -5'
1651 3' -54.9 NC_001347.2 + 87474 0.69 0.851195
Target:  5'- -gUGCaaaaGGCACGUCGGUAGCUgucgaUGCa -3'
miRNA:   3'- aaACGcug-CCGUGUAGUCGUCGA-----GCG- -5'
1651 3' -54.9 NC_001347.2 + 21709 0.69 0.858959
Target:  5'- gUUGCGAuccUGGCGCGUCucuccGGCGGCUgugGCu -3'
miRNA:   3'- aAACGCU---GCCGUGUAG-----UCGUCGAg--CG- -5'
1651 3' -54.9 NC_001347.2 + 66518 0.69 0.851195
Target:  5'- --gGCGGCGGCgAUcgCAGCcucCUCGCu -3'
miRNA:   3'- aaaCGCUGCCG-UGuaGUCGuc-GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 168530 0.69 0.866518
Target:  5'- -cUGCucGGCGGCGUA-CAGCGGgUCGCg -3'
miRNA:   3'- aaACG--CUGCCGUGUaGUCGUCgAGCG- -5'
1651 3' -54.9 NC_001347.2 + 148599 0.69 0.866518
Target:  5'- --aGCGGCGGCGugacCGGCGGUgcggUCGCg -3'
miRNA:   3'- aaaCGCUGCCGUgua-GUCGUCG----AGCG- -5'
1651 3' -54.9 NC_001347.2 + 18544 0.69 0.887918
Target:  5'- -cUGCGAgUGGUACGUCGuCGGcCUCGUg -3'
miRNA:   3'- aaACGCU-GCCGUGUAGUcGUC-GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 210385 0.69 0.873868
Target:  5'- --cGCGACGGCAguUCGGguGauacggCGUg -3'
miRNA:   3'- aaaCGCUGCCGUguAGUCguCga----GCG- -5'
1651 3' -54.9 NC_001347.2 + 18815 0.69 0.881003
Target:  5'- -cUGCGcuggcACGGCGCAcUgGGCAccaucacacGCUCGCa -3'
miRNA:   3'- aaACGC-----UGCCGUGU-AgUCGU---------CGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 65173 0.69 0.881003
Target:  5'- -aUGCG-CGGCuACAgcgagugCGGCgauGGCUCGCc -3'
miRNA:   3'- aaACGCuGCCG-UGUa------GUCG---UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 130887 0.69 0.873868
Target:  5'- ---aCGACGGCAaccCAgcagCAGCAGC-CGCc -3'
miRNA:   3'- aaacGCUGCCGU---GUa---GUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 197562 0.69 0.866518
Target:  5'- --cGUGGCGGC-CGaCGGCAGCgUGCu -3'
miRNA:   3'- aaaCGCUGCCGuGUaGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 86256 0.69 0.873143
Target:  5'- --gGCGAucuCGGCGCGcgaagcuUCGGCGGCgugcCGCu -3'
miRNA:   3'- aaaCGCU---GCCGUGU-------AGUCGUCGa---GCG- -5'
1651 3' -54.9 NC_001347.2 + 157237 0.7 0.835083
Target:  5'- --aGCGGCGGUagaaACGUCGcagccaccggcGCAGUUUGCg -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGU-----------CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 145287 0.7 0.835083
Target:  5'- -aUGUGGauGCACGUgCGGgAGCUCGUg -3'
miRNA:   3'- aaACGCUgcCGUGUA-GUCgUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 68703 0.7 0.826749
Target:  5'- --cGCGGCGGCGCAa-AGC-GCgagCGCa -3'
miRNA:   3'- aaaCGCUGCCGUGUagUCGuCGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.