Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 3' | -54.9 | NC_001347.2 | + | 191781 | 0.7 | 0.818238 |
Target: 5'- -aUGUGGCGGCACAgccGCAGg-CGCu -3' miRNA: 3'- aaACGCUGCCGUGUaguCGUCgaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 197262 | 0.7 | 0.818238 |
Target: 5'- --cGCGGCGGCGCGUUAuaAGCacCGUg -3' miRNA: 3'- aaaCGCUGCCGUGUAGUcgUCGa-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 79052 | 0.7 | 0.818238 |
Target: 5'- --cGCGAgaaGGCGCGUCGGCgccaaaugAGC-CGCg -3' miRNA: 3'- aaaCGCUg--CCGUGUAGUCG--------UCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 68703 | 0.7 | 0.826749 |
Target: 5'- --cGCGGCGGCGCAa-AGC-GCgagCGCa -3' miRNA: 3'- aaaCGCUGCCGUGUagUCGuCGa--GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 145287 | 0.7 | 0.835083 |
Target: 5'- -aUGUGGauGCACGUgCGGgAGCUCGUg -3' miRNA: 3'- aaACGCUgcCGUGUA-GUCgUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 157237 | 0.7 | 0.835083 |
Target: 5'- --aGCGGCGGUagaaACGUCGcagccaccggcGCAGUUUGCg -3' miRNA: 3'- aaaCGCUGCCG----UGUAGU-----------CGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 190498 | 0.7 | 0.841619 |
Target: 5'- -cUGCGggaucacgauggaacGCGuGCGCGUCcacagcgugacuuugAGCGGCUCGCc -3' miRNA: 3'- aaACGC---------------UGC-CGUGUAG---------------UCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 110187 | 0.71 | 0.79173 |
Target: 5'- -gUGCuuCGGCuCAUCaccaacguggaaGGCGGCUCGCu -3' miRNA: 3'- aaACGcuGCCGuGUAG------------UCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 171810 | 0.71 | 0.77333 |
Target: 5'- -cUGCGuccGCuGCACAUCGGCguggcuGGCUUGCa -3' miRNA: 3'- aaACGC---UGcCGUGUAGUCG------UCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 214698 | 0.71 | 0.754428 |
Target: 5'- ---aCGGCGGCGaa-CAGCAGCaUCGCg -3' miRNA: 3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 204006 | 0.71 | 0.763937 |
Target: 5'- --cGCGugGGCAUAUCAGaAGC-CGg -3' miRNA: 3'- aaaCGCugCCGUGUAGUCgUCGaGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 199644 | 0.71 | 0.79173 |
Target: 5'- --aGCGAgGGCACAcuaGGCGG-UCGCg -3' miRNA: 3'- aaaCGCUgCCGUGUag-UCGUCgAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 128466 | 0.71 | 0.79173 |
Target: 5'- --cGCGACGGCGCGcgCAcGCGGgauuUUCGCu -3' miRNA: 3'- aaaCGCUGCCGUGUa-GU-CGUC----GAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 180051 | 0.71 | 0.79173 |
Target: 5'- -cUGUGGCGGCG----GGCAGCaUCGCg -3' miRNA: 3'- aaACGCUGCCGUguagUCGUCG-AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 97633 | 0.71 | 0.798039 |
Target: 5'- --cGCGAaucauauaaaugccCGGCACGUCGuaCAGCUCGUc -3' miRNA: 3'- aaaCGCU--------------GCCGUGUAGUc-GUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 185236 | 0.71 | 0.800721 |
Target: 5'- gUUGUcAC-GCAUcUCGGCGGCUCGCa -3' miRNA: 3'- aAACGcUGcCGUGuAGUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 115790 | 0.71 | 0.800721 |
Target: 5'- --aGCGGCGGUggGCA-CAGCGGCUaCGa -3' miRNA: 3'- aaaCGCUGCCG--UGUaGUCGUCGA-GCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 152889 | 0.71 | 0.799828 |
Target: 5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3' miRNA: 3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 153245 | 0.72 | 0.735097 |
Target: 5'- --cGCGuCGGCcgGCGaCGGCGGUUCGCc -3' miRNA: 3'- aaaCGCuGCCG--UGUaGUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 2209 | 0.72 | 0.725294 |
Target: 5'- --aGCGAUGGCGgGUcCGGCGGCgUCGg -3' miRNA: 3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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