miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 125794 1.1 0.004026
Target:  5'- cUUUGCGACGGCACAUCAGCAGCUCGCa -3'
miRNA:   3'- -AAACGCUGCCGUGUAGUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 65848 0.82 0.257003
Target:  5'- -cUGCGACGGCAgCGcCAGCGGCUgGCc -3'
miRNA:   3'- aaACGCUGCCGU-GUaGUCGUCGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 118717 0.76 0.504354
Target:  5'- --gGCGACGGUACuuuuGCAGCUCGg -3'
miRNA:   3'- aaaCGCUGCCGUGuaguCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 36852 0.76 0.485221
Target:  5'- --aGUGACGGCG-AUCAGCAGC-CGUg -3'
miRNA:   3'- aaaCGCUGCCGUgUAGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 75973 0.76 0.494745
Target:  5'- -cUGCGGCGagucgcccaGCGgGUCGGcCAGCUCGCa -3'
miRNA:   3'- aaACGCUGC---------CGUgUAGUC-GUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 38752 0.76 0.494745
Target:  5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3'
miRNA:   3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 75410 0.76 0.514042
Target:  5'- --aGCGGCGGCcgugGCggCGGCAGCggCGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 158104 0.76 0.504354
Target:  5'- --cGCGGCGGCcuCAUCGGCAGCgUCa- -3'
miRNA:   3'- aaaCGCUGCCGu-GUAGUCGUCG-AGcg -5'
1651 3' -54.9 NC_001347.2 + 163951 0.75 0.563507
Target:  5'- aUUGUGcAC-GCGCGUCAGCAGCUgCGUg -3'
miRNA:   3'- aAACGC-UGcCGUGUAGUCGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 111647 0.75 0.533639
Target:  5'- -gUGCGuaccGCGGCagACAUCAGCAGCacgUUGCg -3'
miRNA:   3'- aaACGC----UGCCG--UGUAGUCGUCG---AGCG- -5'
1651 3' -54.9 NC_001347.2 + 38551 0.74 0.624346
Target:  5'- --cGC-ACGGC-CGUCAGCAGCgaCGCg -3'
miRNA:   3'- aaaCGcUGCCGuGUAGUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 79653 0.73 0.685374
Target:  5'- --aGCGccagGCGGCugAUCuGCAGCgCGCu -3'
miRNA:   3'- aaaCGC----UGCCGugUAGuCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 111998 0.73 0.654942
Target:  5'- -cUGCGGCGGCuugggCAGCAGCg-GCg -3'
miRNA:   3'- aaACGCUGCCGugua-GUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 153245 0.72 0.735097
Target:  5'- --cGCGuCGGCcgGCGaCGGCGGUUCGCc -3'
miRNA:   3'- aaaCGCuGCCG--UGUaGUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 1706 0.72 0.705457
Target:  5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3'
miRNA:   3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 106239 0.72 0.705457
Target:  5'- --gGCGGCGGCggugGCGUUGGCAGCaauaGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGUCGUCGag--CG- -5'
1651 3' -54.9 NC_001347.2 + 2209 0.72 0.725294
Target:  5'- --aGCGAUGGCGgGUcCGGCGGCgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5'
1651 3' -54.9 NC_001347.2 + 87627 0.72 0.744811
Target:  5'- --aGCGACGGCGgcugcuguugcuCGcCAGCGGCgCGCg -3'
miRNA:   3'- aaaCGCUGCCGU------------GUaGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 184949 0.72 0.725294
Target:  5'- --aGCucguCGGCcgGCGUgGGCGGCUCGCg -3'
miRNA:   3'- aaaCGcu--GCCG--UGUAgUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 110187 0.71 0.79173
Target:  5'- -gUGCuuCGGCuCAUCaccaacguggaaGGCGGCUCGCu -3'
miRNA:   3'- aaACGcuGCCGuGUAG------------UCGUCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.