miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 152889 0.71 0.799828
Target:  5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3'
miRNA:   3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 115790 0.71 0.800721
Target:  5'- --aGCGGCGGUggGCA-CAGCGGCUaCGa -3'
miRNA:   3'- aaaCGCUGCCG--UGUaGUCGUCGA-GCg -5'
1651 3' -54.9 NC_001347.2 + 185236 0.71 0.800721
Target:  5'- gUUGUcAC-GCAUcUCGGCGGCUCGCa -3'
miRNA:   3'- aAACGcUGcCGUGuAGUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 204006 0.71 0.763937
Target:  5'- --cGCGugGGCAUAUCAGaAGC-CGg -3'
miRNA:   3'- aaaCGCugCCGUGUAGUCgUCGaGCg -5'
1651 3' -54.9 NC_001347.2 + 214698 0.71 0.754428
Target:  5'- ---aCGGCGGCGaa-CAGCAGCaUCGCg -3'
miRNA:   3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 110187 0.71 0.79173
Target:  5'- -gUGCuuCGGCuCAUCaccaacguggaaGGCGGCUCGCu -3'
miRNA:   3'- aaACGcuGCCGuGUAG------------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 180051 0.71 0.79173
Target:  5'- -cUGUGGCGGCG----GGCAGCaUCGCg -3'
miRNA:   3'- aaACGCUGCCGUguagUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 97633 0.71 0.798039
Target:  5'- --cGCGAaucauauaaaugccCGGCACGUCGuaCAGCUCGUc -3'
miRNA:   3'- aaaCGCU--------------GCCGUGUAGUc-GUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 199644 0.71 0.79173
Target:  5'- --aGCGAgGGCACAcuaGGCGG-UCGCg -3'
miRNA:   3'- aaaCGCUgCCGUGUag-UCGUCgAGCG- -5'
1651 3' -54.9 NC_001347.2 + 171810 0.71 0.77333
Target:  5'- -cUGCGuccGCuGCACAUCGGCguggcuGGCUUGCa -3'
miRNA:   3'- aaACGC---UGcCGUGUAGUCG------UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 197262 0.7 0.818238
Target:  5'- --cGCGGCGGCGCGUUAuaAGCacCGUg -3'
miRNA:   3'- aaaCGCUGCCGUGUAGUcgUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 118028 0.7 0.809559
Target:  5'- --gGCGACGGUccuuCGUCG--AGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCGu---GUAGUcgUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 68703 0.7 0.826749
Target:  5'- --cGCGGCGGCGCAa-AGC-GCgagCGCa -3'
miRNA:   3'- aaaCGCUGCCGUGUagUCGuCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 79052 0.7 0.818238
Target:  5'- --cGCGAgaaGGCGCGUCGGCgccaaaugAGC-CGCg -3'
miRNA:   3'- aaaCGCUg--CCGUGUAGUCG--------UCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 145287 0.7 0.835083
Target:  5'- -aUGUGGauGCACGUgCGGgAGCUCGUg -3'
miRNA:   3'- aaACGCUgcCGUGUA-GUCgUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 191781 0.7 0.818238
Target:  5'- -aUGUGGCGGCACAgccGCAGg-CGCu -3'
miRNA:   3'- aaACGCUGCCGUGUaguCGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 190498 0.7 0.841619
Target:  5'- -cUGCGggaucacgauggaacGCGuGCGCGUCcacagcgugacuuugAGCGGCUCGCc -3'
miRNA:   3'- aaACGC---------------UGC-CGUGUAG---------------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 2158 0.7 0.809559
Target:  5'- --cGgGGCGGaCGCGgcagCAGCAGCggCGCc -3'
miRNA:   3'- aaaCgCUGCC-GUGUa---GUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 194017 0.7 0.809559
Target:  5'- -gUGCGGCuGGCGCGcgaccUCAGgGGCUuCGUg -3'
miRNA:   3'- aaACGCUG-CCGUGU-----AGUCgUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 157237 0.7 0.835083
Target:  5'- --aGCGGCGGUagaaACGUCGcagccaccggcGCAGUUUGCg -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGU-----------CGUCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.