Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 3' | -54.9 | NC_001347.2 | + | 139453 | 0.69 | 0.851195 |
Target: 5'- -gUGCGACuGCACggCGGCgaGGCggugCGCg -3' miRNA: 3'- aaACGCUGcCGUGuaGUCG--UCGa---GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 66518 | 0.69 | 0.851195 |
Target: 5'- --gGCGGCGGCgAUcgCAGCcucCUCGCu -3' miRNA: 3'- aaaCGCUGCCG-UGuaGUCGuc-GAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 87474 | 0.69 | 0.851195 |
Target: 5'- -gUGCaaaaGGCACGUCGGUAGCUgucgaUGCa -3' miRNA: 3'- aaACGcug-CCGUGUAGUCGUCGA-----GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 158374 | 0.69 | 0.858959 |
Target: 5'- -gUGCGGCaGCGCGUCuacgAGCUCGUc -3' miRNA: 3'- aaACGCUGcCGUGUAGucg-UCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 21709 | 0.69 | 0.858959 |
Target: 5'- gUUGCGAuccUGGCGCGUCucuccGGCGGCUgugGCu -3' miRNA: 3'- aAACGCU---GCCGUGUAG-----UCGUCGAg--CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 100187 | 0.69 | 0.858959 |
Target: 5'- -aUGCG-CGGCGCcgCGGC--CUCGCc -3' miRNA: 3'- aaACGCuGCCGUGuaGUCGucGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 173542 | 0.69 | 0.866518 |
Target: 5'- --gGCGGCGGCGgugguggCGGCAGCcucucuUCGCu -3' miRNA: 3'- aaaCGCUGCCGUgua----GUCGUCG------AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 168530 | 0.69 | 0.866518 |
Target: 5'- -cUGCucGGCGGCGUA-CAGCGGgUCGCg -3' miRNA: 3'- aaACG--CUGCCGUGUaGUCGUCgAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 148599 | 0.69 | 0.866518 |
Target: 5'- --aGCGGCGGCGugacCGGCGGUgcggUCGCg -3' miRNA: 3'- aaaCGCUGCCGUgua-GUCGUCG----AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 197562 | 0.69 | 0.866518 |
Target: 5'- --cGUGGCGGC-CGaCGGCAGCgUGCu -3' miRNA: 3'- aaaCGCUGCCGuGUaGUCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 86256 | 0.69 | 0.873143 |
Target: 5'- --gGCGAucuCGGCGCGcgaagcuUCGGCGGCgugcCGCu -3' miRNA: 3'- aaaCGCU---GCCGUGU-------AGUCGUCGa---GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 210385 | 0.69 | 0.873868 |
Target: 5'- --cGCGACGGCAguUCGGguGauacggCGUg -3' miRNA: 3'- aaaCGCUGCCGUguAGUCguCga----GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 130887 | 0.69 | 0.873868 |
Target: 5'- ---aCGACGGCAaccCAgcagCAGCAGC-CGCc -3' miRNA: 3'- aaacGCUGCCGU---GUa---GUCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 18815 | 0.69 | 0.881003 |
Target: 5'- -cUGCGcuggcACGGCGCAcUgGGCAccaucacacGCUCGCa -3' miRNA: 3'- aaACGC-----UGCCGUGU-AgUCGU---------CGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 65173 | 0.69 | 0.881003 |
Target: 5'- -aUGCG-CGGCuACAgcgagugCGGCgauGGCUCGCc -3' miRNA: 3'- aaACGCuGCCG-UGUa------GUCG---UCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 18544 | 0.69 | 0.887918 |
Target: 5'- -cUGCGAgUGGUACGUCGuCGGcCUCGUg -3' miRNA: 3'- aaACGCU-GCCGUGUAGUcGUC-GAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 43662 | 0.68 | 0.89395 |
Target: 5'- --cGCGACaGGCGCGUCgagggGGCAGgaacaccCUUGCg -3' miRNA: 3'- aaaCGCUG-CCGUGUAG-----UCGUC-------GAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 128280 | 0.68 | 0.897869 |
Target: 5'- --gGCGACGGCGCcacugccgcugcgauUuccgacacggacuugCAGCGGCUCGUc -3' miRNA: 3'- aaaCGCUGCCGUGu--------------A---------------GUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 161740 | 0.68 | 0.901072 |
Target: 5'- --aGCGucACGGCGCucUCGaCAGCUUGCu -3' miRNA: 3'- aaaCGC--UGCCGUGu-AGUcGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 154945 | 0.68 | 0.901072 |
Target: 5'- --gGCGACGGCuccGCcgCAGCuAGUgguguuggUCGCa -3' miRNA: 3'- aaaCGCUGCCG---UGuaGUCG-UCG--------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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