Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 3' | -54.9 | NC_001347.2 | + | 27683 | 0.68 | 0.918498 |
Target: 5'- --cGCGAcgaacugcCGGCugcucagACGUUAcGCGGCUCGCu -3' miRNA: 3'- aaaCGCU--------GCCG-------UGUAGU-CGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 44037 | 0.68 | 0.913302 |
Target: 5'- --gGCGACGGCAg--CGGUGGUggCGCu -3' miRNA: 3'- aaaCGCUGCCGUguaGUCGUCGa-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 82720 | 0.68 | 0.913302 |
Target: 5'- --gGUGGCGGUgguGCAgCGGCGGCUgaGCg -3' miRNA: 3'- aaaCGCUGCCG---UGUaGUCGUCGAg-CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 214012 | 0.68 | 0.913302 |
Target: 5'- --aGCGACGGCACGUaguuguGguGCUaaacugGCg -3' miRNA: 3'- aaaCGCUGCCGUGUAgu----CguCGAg-----CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 110523 | 0.68 | 0.913302 |
Target: 5'- --cGCGGCGGCGaagaaaAUCGGCcGCgaauggaagCGCg -3' miRNA: 3'- aaaCGCUGCCGUg-----UAGUCGuCGa--------GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 38376 | 0.68 | 0.913302 |
Target: 5'- --cGCGcACGGCGCGUCcccgccGGCGGCcucCGUc -3' miRNA: 3'- aaaCGC-UGCCGUGUAG------UCGUCGa--GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 103614 | 0.68 | 0.913302 |
Target: 5'- -gUG-GGCGaGCACGUCaAGguGCUCGa -3' miRNA: 3'- aaACgCUGC-CGUGUAG-UCguCGAGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 160704 | 0.68 | 0.913302 |
Target: 5'- --cGCGAuCGGCGgcCGUCAGCuccuGCUgCGUg -3' miRNA: 3'- aaaCGCU-GCCGU--GUAGUCGu---CGA-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 36376 | 0.68 | 0.912712 |
Target: 5'- --gGCGGCaGGgGCAugcggccUUAGCGGCUCGg -3' miRNA: 3'- aaaCGCUG-CCgUGU-------AGUCGUCGAGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 98053 | 0.68 | 0.909731 |
Target: 5'- --cGCGGCGGCAgcggccgcggcuucCAUCAucgugaugcaaaccGC-GCUCGCg -3' miRNA: 3'- aaaCGCUGCCGU--------------GUAGU--------------CGuCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 158735 | 0.68 | 0.907304 |
Target: 5'- --gGCGcGCGGCGguUUAGCAGCg-GCu -3' miRNA: 3'- aaaCGC-UGCCGUguAGUCGUCGagCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 185142 | 0.68 | 0.907304 |
Target: 5'- --cGCcgGGCGGCACGggcaagugcuUCAGCAGCa-GCu -3' miRNA: 3'- aaaCG--CUGCCGUGU----------AGUCGUCGagCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 118800 | 0.68 | 0.907304 |
Target: 5'- --gGCGACGGUAgAUgucCAGguGCUuaCGCu -3' miRNA: 3'- aaaCGCUGCCGUgUA---GUCguCGA--GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 153964 | 0.68 | 0.907304 |
Target: 5'- --cGCGGCGGUACAgcUCGcGCAGgaCGa -3' miRNA: 3'- aaaCGCUGCCGUGU--AGU-CGUCgaGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 109536 | 0.68 | 0.906691 |
Target: 5'- --gGCGACGGCgugcACGUCGggcguuaugacacGCGGC-CGCc -3' miRNA: 3'- aaaCGCUGCCG----UGUAGU-------------CGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 154945 | 0.68 | 0.901072 |
Target: 5'- --gGCGACGGCuccGCcgCAGCuAGUgguguuggUCGCa -3' miRNA: 3'- aaaCGCUGCCG---UGuaGUCG-UCG--------AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 161740 | 0.68 | 0.901072 |
Target: 5'- --aGCGucACGGCGCucUCGaCAGCUUGCu -3' miRNA: 3'- aaaCGC--UGCCGUGu-AGUcGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 93437 | 0.68 | 0.901072 |
Target: 5'- --cGCGcACGGCGCGaaUCAGCacguacucgacGGCgaugCGCg -3' miRNA: 3'- aaaCGC-UGCCGUGU--AGUCG-----------UCGa---GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 88648 | 0.68 | 0.901072 |
Target: 5'- --aGCGGCGGC-Cugc-GCAGCUuCGCg -3' miRNA: 3'- aaaCGCUGCCGuGuaguCGUCGA-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 128280 | 0.68 | 0.897869 |
Target: 5'- --gGCGACGGCGCcacugccgcugcgauUuccgacacggacuugCAGCGGCUCGUc -3' miRNA: 3'- aaaCGCUGCCGUGu--------------A---------------GUCGUCGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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