miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 211 0.66 0.95666
Target:  5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3'
miRNA:   3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 1349 0.67 0.944318
Target:  5'- --cGCGACGGaccuGCGUCAacugucgccGCGGgaCGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGUAGU---------CGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 1706 0.72 0.705457
Target:  5'- --gGCGACGGCGCucggaCGGgAGCUgCGCc -3'
miRNA:   3'- aaaCGCUGCCGUGua---GUCgUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 1875 0.67 0.929877
Target:  5'- -gUGCGuCGGCACcugaaccagcGUCugugcuGCGGCUgGCu -3'
miRNA:   3'- aaACGCuGCCGUG----------UAGu-----CGUCGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 2158 0.7 0.809559
Target:  5'- --cGgGGCGGaCGCGgcagCAGCAGCggCGCc -3'
miRNA:   3'- aaaCgCUGCC-GUGUa---GUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 2209 0.72 0.725294
Target:  5'- --aGCGAUGGCGgGUcCGGCGGCgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5'
1651 3' -54.9 NC_001347.2 + 18544 0.69 0.887918
Target:  5'- -cUGCGAgUGGUACGUCGuCGGcCUCGUg -3'
miRNA:   3'- aaACGCU-GCCGUGUAGUcGUC-GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 18815 0.69 0.881003
Target:  5'- -cUGCGcuggcACGGCGCAcUgGGCAccaucacacGCUCGCa -3'
miRNA:   3'- aaACGC-----UGCCGUGU-AgUCGU---------CGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 19165 0.67 0.93974
Target:  5'- --aGCGACGaGgACGagAGCGGC-CGCc -3'
miRNA:   3'- aaaCGCUGC-CgUGUagUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 20313 0.67 0.934432
Target:  5'- --aGaCGACGGUcgcugccACAgCAGCGGCgUCGCc -3'
miRNA:   3'- aaaC-GCUGCCG-------UGUaGUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 21709 0.69 0.858959
Target:  5'- gUUGCGAuccUGGCGCGUCucuccGGCGGCUgugGCu -3'
miRNA:   3'- aAACGCU---GCCGUGUAG-----UCGUCGAg--CG- -5'
1651 3' -54.9 NC_001347.2 + 22519 0.66 0.952775
Target:  5'- uUUUGCGGagaaaGGCGCGUCAuCGGUcugUCGUu -3'
miRNA:   3'- -AAACGCUg----CCGUGUAGUcGUCG---AGCG- -5'
1651 3' -54.9 NC_001347.2 + 26781 0.67 0.93974
Target:  5'- --cGUGA-GcCACGUCAuccGCAGCUCGCu -3'
miRNA:   3'- aaaCGCUgCcGUGUAGU---CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 27683 0.68 0.918498
Target:  5'- --cGCGAcgaacugcCGGCugcucagACGUUAcGCGGCUCGCu -3'
miRNA:   3'- aaaCGCU--------GCCG-------UGUAGU-CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 31526 0.67 0.948662
Target:  5'- -aUGUGGCuccgccGGCACGUCAGU--UUCGCu -3'
miRNA:   3'- aaACGCUG------CCGUGUAGUCGucGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 34319 0.67 0.929877
Target:  5'- gUUGaCGugGGCggcgaugagaACGUCAGCGGUg-GCg -3'
miRNA:   3'- aAAC-GCugCCG----------UGUAGUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 36376 0.68 0.912712
Target:  5'- --gGCGGCaGGgGCAugcggccUUAGCGGCUCGg -3'
miRNA:   3'- aaaCGCUG-CCgUGU-------AGUCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 36718 0.66 0.952775
Target:  5'- --aGUGGCGGCAg--CAGguGCaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCguCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 36852 0.76 0.485221
Target:  5'- --aGUGACGGCG-AUCAGCAGC-CGUg -3'
miRNA:   3'- aaaCGCUGCCGUgUAGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 37935 0.67 0.934927
Target:  5'- --cGCGGCGcGCGgGUgCAGguGCagCGCg -3'
miRNA:   3'- aaaCGCUGC-CGUgUA-GUCguCGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.