Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 3' | -54.9 | NC_001347.2 | + | 82720 | 0.68 | 0.913302 |
Target: 5'- --gGUGGCGGUgguGCAgCGGCGGCUgaGCg -3' miRNA: 3'- aaaCGCUGCCG---UGUaGUCGUCGAg-CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 86256 | 0.69 | 0.873143 |
Target: 5'- --gGCGAucuCGGCGCGcgaagcuUCGGCGGCgugcCGCu -3' miRNA: 3'- aaaCGCU---GCCGUGU-------AGUCGUCGa---GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 87287 | 0.66 | 0.952775 |
Target: 5'- -cUGaaaGACGGcCACA-CAGC-GCUCGUu -3' miRNA: 3'- aaACg--CUGCC-GUGUaGUCGuCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 87474 | 0.69 | 0.851195 |
Target: 5'- -gUGCaaaaGGCACGUCGGUAGCUgucgaUGCa -3' miRNA: 3'- aaACGcug-CCGUGUAGUCGUCGA-----GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 87627 | 0.72 | 0.744811 |
Target: 5'- --aGCGACGGCGgcugcuguugcuCGcCAGCGGCgCGCg -3' miRNA: 3'- aaaCGCUGCCGU------------GUaGUCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 88648 | 0.68 | 0.901072 |
Target: 5'- --aGCGGCGGC-Cugc-GCAGCUuCGCg -3' miRNA: 3'- aaaCGCUGCCGuGuaguCGUCGA-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 90158 | 0.67 | 0.924589 |
Target: 5'- --aGCGACGGCAaaggcuuagCcGCGGC-CGCg -3' miRNA: 3'- aaaCGCUGCCGUgua------GuCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 93240 | 0.67 | 0.929877 |
Target: 5'- --aGCGGCGGCACccCGGCucagacgaGGCguuagCGCc -3' miRNA: 3'- aaaCGCUGCCGUGuaGUCG--------UCGa----GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 93437 | 0.68 | 0.901072 |
Target: 5'- --cGCGcACGGCGCGaaUCAGCacguacucgacGGCgaugCGCg -3' miRNA: 3'- aaaCGC-UGCCGUGU--AGUCG-----------UCGa---GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 97633 | 0.71 | 0.798039 |
Target: 5'- --cGCGAaucauauaaaugccCGGCACGUCGuaCAGCUCGUc -3' miRNA: 3'- aaaCGCU--------------GCCGUGUAGUc-GUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 98053 | 0.68 | 0.909731 |
Target: 5'- --cGCGGCGGCAgcggccgcggcuucCAUCAucgugaugcaaaccGC-GCUCGCg -3' miRNA: 3'- aaaCGCUGCCGU--------------GUAGU--------------CGuCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 100140 | 0.67 | 0.929877 |
Target: 5'- cUUGCGGacGCACGUUgaguccaaagAGCAGCUUGUa -3' miRNA: 3'- aAACGCUgcCGUGUAG----------UCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 100187 | 0.69 | 0.858959 |
Target: 5'- -aUGCG-CGGCGCcgCGGC--CUCGCc -3' miRNA: 3'- aaACGCuGCCGUGuaGUCGucGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 100957 | 0.66 | 0.952775 |
Target: 5'- --cGCGAUGGagaaCugGUCGGC-GCUCGa -3' miRNA: 3'- aaaCGCUGCC----GugUAGUCGuCGAGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 103614 | 0.68 | 0.913302 |
Target: 5'- -gUG-GGCGaGCACGUCaAGguGCUCGa -3' miRNA: 3'- aaACgCUGC-CGUGUAG-UCguCGAGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 106239 | 0.72 | 0.705457 |
Target: 5'- --gGCGGCGGCggugGCGUUGGCAGCaauaGCa -3' miRNA: 3'- aaaCGCUGCCG----UGUAGUCGUCGag--CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 106402 | 0.66 | 0.963765 |
Target: 5'- --cGCcgGACGaGCugGacaaguaCAGCGGCUCGCc -3' miRNA: 3'- aaaCG--CUGC-CGugUa------GUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 109474 | 0.67 | 0.93974 |
Target: 5'- --gGCGGCGGCGCcaUGGCGGg-CGCc -3' miRNA: 3'- aaaCGCUGCCGUGuaGUCGUCgaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 109536 | 0.68 | 0.906691 |
Target: 5'- --gGCGACGGCgugcACGUCGggcguuaugacacGCGGC-CGCc -3' miRNA: 3'- aaaCGCUGCCG----UGUAGU-------------CGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 110187 | 0.71 | 0.79173 |
Target: 5'- -gUGCuuCGGCuCAUCaccaacguggaaGGCGGCUCGCu -3' miRNA: 3'- aaACGcuGCCGuGUAG------------UCGUCGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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