Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 3' | -54.9 | NC_001347.2 | + | 110523 | 0.68 | 0.913302 |
Target: 5'- --cGCGGCGGCGaagaaaAUCGGCcGCgaauggaagCGCg -3' miRNA: 3'- aaaCGCUGCCGUg-----UAGUCGuCGa--------GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 111647 | 0.75 | 0.533639 |
Target: 5'- -gUGCGuaccGCGGCagACAUCAGCAGCacgUUGCg -3' miRNA: 3'- aaACGC----UGCCG--UGUAGUCGUCG---AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 111998 | 0.73 | 0.654942 |
Target: 5'- -cUGCGGCGGCuugggCAGCAGCg-GCg -3' miRNA: 3'- aaACGCUGCCGugua-GUCGUCGagCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 115790 | 0.71 | 0.800721 |
Target: 5'- --aGCGGCGGUggGCA-CAGCGGCUaCGa -3' miRNA: 3'- aaaCGCUGCCG--UGUaGUCGUCGA-GCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 118028 | 0.7 | 0.809559 |
Target: 5'- --gGCGACGGUccuuCGUCG--AGCUCGCa -3' miRNA: 3'- aaaCGCUGCCGu---GUAGUcgUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 118717 | 0.76 | 0.504354 |
Target: 5'- --gGCGACGGUACuuuuGCAGCUCGg -3' miRNA: 3'- aaaCGCUGCCGUGuaguCGUCGAGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 118800 | 0.68 | 0.907304 |
Target: 5'- --gGCGACGGUAgAUgucCAGguGCUuaCGCu -3' miRNA: 3'- aaaCGCUGCCGUgUA---GUCguCGA--GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 125794 | 1.1 | 0.004026 |
Target: 5'- cUUUGCGACGGCACAUCAGCAGCUCGCa -3' miRNA: 3'- -AAACGCUGCCGUGUAGUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 128280 | 0.68 | 0.897869 |
Target: 5'- --gGCGACGGCGCcacugccgcugcgauUuccgacacggacuugCAGCGGCUCGUc -3' miRNA: 3'- aaaCGCUGCCGUGu--------------A---------------GUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 128466 | 0.71 | 0.79173 |
Target: 5'- --cGCGACGGCGCGcgCAcGCGGgauuUUCGCu -3' miRNA: 3'- aaaCGCUGCCGUGUa-GU-CGUC----GAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 130887 | 0.69 | 0.873868 |
Target: 5'- ---aCGACGGCAaccCAgcagCAGCAGC-CGCc -3' miRNA: 3'- aaacGCUGCCGU---GUa---GUCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 136286 | 0.66 | 0.966993 |
Target: 5'- --cGCcGCGGCcCAUgccCGGCacggGGCUCGCg -3' miRNA: 3'- aaaCGcUGCCGuGUA---GUCG----UCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 139453 | 0.69 | 0.851195 |
Target: 5'- -gUGCGACuGCACggCGGCgaGGCggugCGCg -3' miRNA: 3'- aaACGCUGcCGUGuaGUCG--UCGa---GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 143034 | 0.66 | 0.963765 |
Target: 5'- --aGCGGCGGCaACAgcuUCGGgAGCagaaccCGCg -3' miRNA: 3'- aaaCGCUGCCG-UGU---AGUCgUCGa-----GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 144524 | 0.67 | 0.924589 |
Target: 5'- cUUUGaUGACGGCcaGCAaCAGCAGCaacaGCa -3' miRNA: 3'- -AAAC-GCUGCCG--UGUaGUCGUCGag--CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 145287 | 0.7 | 0.835083 |
Target: 5'- -aUGUGGauGCACGUgCGGgAGCUCGUg -3' miRNA: 3'- aaACGCUgcCGUGUA-GUCgUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 148599 | 0.69 | 0.866518 |
Target: 5'- --aGCGGCGGCGugacCGGCGGUgcggUCGCg -3' miRNA: 3'- aaaCGCUGCCGUgua-GUCGUCG----AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 149877 | 0.66 | 0.95666 |
Target: 5'- gUUGCcuACGGCGCAg-GGCGGC-CGUu -3' miRNA: 3'- aAACGc-UGCCGUGUagUCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 152889 | 0.71 | 0.799828 |
Target: 5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3' miRNA: 3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 153245 | 0.72 | 0.735097 |
Target: 5'- --cGCGuCGGCcgGCGaCGGCGGUUCGCc -3' miRNA: 3'- aaaCGCuGCCG--UGUaGUCGUCGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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