miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 229690 0.66 0.95666
Target:  5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3'
miRNA:   3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 214698 0.71 0.754428
Target:  5'- ---aCGGCGGCGaa-CAGCAGCaUCGCg -3'
miRNA:   3'- aaacGCUGCCGUguaGUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 214012 0.68 0.913302
Target:  5'- --aGCGACGGCACGUaguuguGguGCUaaacugGCg -3'
miRNA:   3'- aaaCGCUGCCGUGUAgu----CguCGAg-----CG- -5'
1651 3' -54.9 NC_001347.2 + 210385 0.69 0.873868
Target:  5'- --cGCGACGGCAguUCGGguGauacggCGUg -3'
miRNA:   3'- aaaCGCUGCCGUguAGUCguCga----GCG- -5'
1651 3' -54.9 NC_001347.2 + 209088 0.66 0.962414
Target:  5'- --gGCGAacgcaccaccggaGGCGCAUCgaGGCAGCaguugccccacUCGCu -3'
miRNA:   3'- aaaCGCUg------------CCGUGUAG--UCGUCG-----------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 204006 0.71 0.763937
Target:  5'- --cGCGugGGCAUAUCAGaAGC-CGg -3'
miRNA:   3'- aaaCGCugCCGUGUAGUCgUCGaGCg -5'
1651 3' -54.9 NC_001347.2 + 199644 0.71 0.79173
Target:  5'- --aGCGAgGGCACAcuaGGCGG-UCGCg -3'
miRNA:   3'- aaaCGCUgCCGUGUag-UCGUCgAGCG- -5'
1651 3' -54.9 NC_001347.2 + 197562 0.69 0.866518
Target:  5'- --cGUGGCGGC-CGaCGGCAGCgUGCu -3'
miRNA:   3'- aaaCGCUGCCGuGUaGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 197262 0.7 0.818238
Target:  5'- --cGCGGCGGCGCGUUAuaAGCacCGUg -3'
miRNA:   3'- aaaCGCUGCCGUGUAGUcgUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 196026 0.66 0.963765
Target:  5'- cUUUGgGACGcGCACccauuacuugCGGCAGCUaUGCu -3'
miRNA:   3'- -AAACgCUGC-CGUGua--------GUCGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 194017 0.7 0.809559
Target:  5'- -gUGCGGCuGGCGCGcgaccUCAGgGGCUuCGUg -3'
miRNA:   3'- aaACGCUG-CCGUGU-----AGUCgUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 191990 0.66 0.960322
Target:  5'- --aGCGGCGGCgACGgaCGGCGGCg-GUa -3'
miRNA:   3'- aaaCGCUGCCG-UGUa-GUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 191781 0.7 0.818238
Target:  5'- -aUGUGGCGGCACAgccGCAGg-CGCu -3'
miRNA:   3'- aaACGCUGCCGUGUaguCGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 190498 0.7 0.841619
Target:  5'- -cUGCGggaucacgauggaacGCGuGCGCGUCcacagcgugacuuugAGCGGCUCGCc -3'
miRNA:   3'- aaACGC---------------UGC-CGUGUAG---------------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 185236 0.71 0.800721
Target:  5'- gUUGUcAC-GCAUcUCGGCGGCUCGCa -3'
miRNA:   3'- aAACGcUGcCGUGuAGUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 185142 0.68 0.907304
Target:  5'- --cGCcgGGCGGCACGggcaagugcuUCAGCAGCa-GCu -3'
miRNA:   3'- aaaCG--CUGCCGUGU----------AGUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 184949 0.72 0.725294
Target:  5'- --aGCucguCGGCcgGCGUgGGCGGCUCGCg -3'
miRNA:   3'- aaaCGcu--GCCG--UGUAgUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 180051 0.71 0.79173
Target:  5'- -cUGUGGCGGCG----GGCAGCaUCGCg -3'
miRNA:   3'- aaACGCUGCCGUguagUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 173832 0.67 0.93974
Target:  5'- --gGCGGCGGCGgAggaggaggaggCGGCGGUuuggaUCGCa -3'
miRNA:   3'- aaaCGCUGCCGUgUa----------GUCGUCG-----AGCG- -5'
1651 3' -54.9 NC_001347.2 + 173542 0.69 0.866518
Target:  5'- --gGCGGCGGCGgugguggCGGCAGCcucucuUCGCu -3'
miRNA:   3'- aaaCGCUGCCGUgua----GUCGUCG------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.