miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 172031 0.66 0.960322
Target:  5'- gUUGCcGCGGCucucCAUCGcCAGCgCGCg -3'
miRNA:   3'- aAACGcUGCCGu---GUAGUcGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 171810 0.71 0.77333
Target:  5'- -cUGCGuccGCuGCACAUCGGCguggcuGGCUUGCa -3'
miRNA:   3'- aaACGC---UGcCGUGUAGUCG------UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 171595 0.67 0.934927
Target:  5'- -gUGCaGCGGCugA-CGGUgaacguGGCUCGCu -3'
miRNA:   3'- aaACGcUGCCGugUaGUCG------UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 170066 0.66 0.963765
Target:  5'- --gGUGGCGGCGuCGUCAGuUGGCgucccgagUCGCc -3'
miRNA:   3'- aaaCGCUGCCGU-GUAGUC-GUCG--------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 168530 0.69 0.866518
Target:  5'- -cUGCucGGCGGCGUA-CAGCGGgUCGCg -3'
miRNA:   3'- aaACG--CUGCCGUGUaGUCGUCgAGCG- -5'
1651 3' -54.9 NC_001347.2 + 163951 0.75 0.563507
Target:  5'- aUUGUGcAC-GCGCGUCAGCAGCUgCGUg -3'
miRNA:   3'- aAACGC-UGcCGUGUAGUCGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 162675 0.67 0.942969
Target:  5'- --aGCGGuugGGCGCGUUgaucuaggcccaagAGCAGCUCGa -3'
miRNA:   3'- aaaCGCUg--CCGUGUAG--------------UCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 161740 0.68 0.901072
Target:  5'- --aGCGucACGGCGCucUCGaCAGCUUGCu -3'
miRNA:   3'- aaaCGC--UGCCGUGu-AGUcGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 160704 0.68 0.913302
Target:  5'- --cGCGAuCGGCGgcCGUCAGCuccuGCUgCGUg -3'
miRNA:   3'- aaaCGCU-GCCGU--GUAGUCGu---CGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 158735 0.68 0.907304
Target:  5'- --gGCGcGCGGCGguUUAGCAGCg-GCu -3'
miRNA:   3'- aaaCGC-UGCCGUguAGUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 158374 0.69 0.858959
Target:  5'- -gUGCGGCaGCGCGUCuacgAGCUCGUc -3'
miRNA:   3'- aaACGCUGcCGUGUAGucg-UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 158104 0.76 0.504354
Target:  5'- --cGCGGCGGCcuCAUCGGCAGCgUCa- -3'
miRNA:   3'- aaaCGCUGCCGu-GUAGUCGUCG-AGcg -5'
1651 3' -54.9 NC_001347.2 + 157447 0.66 0.966993
Target:  5'- --gGUGACGGCGCucuuUCAGCGuaUgGUu -3'
miRNA:   3'- aaaCGCUGCCGUGu---AGUCGUcgAgCG- -5'
1651 3' -54.9 NC_001347.2 + 157237 0.7 0.835083
Target:  5'- --aGCGGCGGUagaaACGUCGcagccaccggcGCAGUUUGCg -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGU-----------CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 155130 0.67 0.934927
Target:  5'- -aUGaGGCGGcCGCcgCGGCGGCcagCGCu -3'
miRNA:   3'- aaACgCUGCC-GUGuaGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 154945 0.68 0.901072
Target:  5'- --gGCGACGGCuccGCcgCAGCuAGUgguguuggUCGCa -3'
miRNA:   3'- aaaCGCUGCCG---UGuaGUCG-UCG--------AGCG- -5'
1651 3' -54.9 NC_001347.2 + 153964 0.68 0.907304
Target:  5'- --cGCGGCGGUACAgcUCGcGCAGgaCGa -3'
miRNA:   3'- aaaCGCUGCCGUGU--AGU-CGUCgaGCg -5'
1651 3' -54.9 NC_001347.2 + 153245 0.72 0.735097
Target:  5'- --cGCGuCGGCcgGCGaCGGCGGUUCGCc -3'
miRNA:   3'- aaaCGCuGCCG--UGUaGUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 152889 0.71 0.799828
Target:  5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3'
miRNA:   3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 149877 0.66 0.95666
Target:  5'- gUUGCcuACGGCGCAg-GGCGGC-CGUu -3'
miRNA:   3'- aAACGc-UGCCGUGUagUCGUCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.