miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 148599 0.69 0.866518
Target:  5'- --aGCGGCGGCGugacCGGCGGUgcggUCGCg -3'
miRNA:   3'- aaaCGCUGCCGUgua-GUCGUCG----AGCG- -5'
1651 3' -54.9 NC_001347.2 + 145287 0.7 0.835083
Target:  5'- -aUGUGGauGCACGUgCGGgAGCUCGUg -3'
miRNA:   3'- aaACGCUgcCGUGUA-GUCgUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 144524 0.67 0.924589
Target:  5'- cUUUGaUGACGGCcaGCAaCAGCAGCaacaGCa -3'
miRNA:   3'- -AAAC-GCUGCCG--UGUaGUCGUCGag--CG- -5'
1651 3' -54.9 NC_001347.2 + 143034 0.66 0.963765
Target:  5'- --aGCGGCGGCaACAgcuUCGGgAGCagaaccCGCg -3'
miRNA:   3'- aaaCGCUGCCG-UGU---AGUCgUCGa-----GCG- -5'
1651 3' -54.9 NC_001347.2 + 139453 0.69 0.851195
Target:  5'- -gUGCGACuGCACggCGGCgaGGCggugCGCg -3'
miRNA:   3'- aaACGCUGcCGUGuaGUCG--UCGa---GCG- -5'
1651 3' -54.9 NC_001347.2 + 136286 0.66 0.966993
Target:  5'- --cGCcGCGGCcCAUgccCGGCacggGGCUCGCg -3'
miRNA:   3'- aaaCGcUGCCGuGUA---GUCG----UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 130887 0.69 0.873868
Target:  5'- ---aCGACGGCAaccCAgcagCAGCAGC-CGCc -3'
miRNA:   3'- aaacGCUGCCGU---GUa---GUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 128466 0.71 0.79173
Target:  5'- --cGCGACGGCGCGcgCAcGCGGgauuUUCGCu -3'
miRNA:   3'- aaaCGCUGCCGUGUa-GU-CGUC----GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 128280 0.68 0.897869
Target:  5'- --gGCGACGGCGCcacugccgcugcgauUuccgacacggacuugCAGCGGCUCGUc -3'
miRNA:   3'- aaaCGCUGCCGUGu--------------A---------------GUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 125794 1.1 0.004026
Target:  5'- cUUUGCGACGGCACAUCAGCAGCUCGCa -3'
miRNA:   3'- -AAACGCUGCCGUGUAGUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 118800 0.68 0.907304
Target:  5'- --gGCGACGGUAgAUgucCAGguGCUuaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUgUA---GUCguCGA--GCG- -5'
1651 3' -54.9 NC_001347.2 + 118717 0.76 0.504354
Target:  5'- --gGCGACGGUACuuuuGCAGCUCGg -3'
miRNA:   3'- aaaCGCUGCCGUGuaguCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 118028 0.7 0.809559
Target:  5'- --gGCGACGGUccuuCGUCG--AGCUCGCa -3'
miRNA:   3'- aaaCGCUGCCGu---GUAGUcgUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 115790 0.71 0.800721
Target:  5'- --aGCGGCGGUggGCA-CAGCGGCUaCGa -3'
miRNA:   3'- aaaCGCUGCCG--UGUaGUCGUCGA-GCg -5'
1651 3' -54.9 NC_001347.2 + 111998 0.73 0.654942
Target:  5'- -cUGCGGCGGCuugggCAGCAGCg-GCg -3'
miRNA:   3'- aaACGCUGCCGugua-GUCGUCGagCG- -5'
1651 3' -54.9 NC_001347.2 + 111647 0.75 0.533639
Target:  5'- -gUGCGuaccGCGGCagACAUCAGCAGCacgUUGCg -3'
miRNA:   3'- aaACGC----UGCCG--UGUAGUCGUCG---AGCG- -5'
1651 3' -54.9 NC_001347.2 + 110523 0.68 0.913302
Target:  5'- --cGCGGCGGCGaagaaaAUCGGCcGCgaauggaagCGCg -3'
miRNA:   3'- aaaCGCUGCCGUg-----UAGUCGuCGa--------GCG- -5'
1651 3' -54.9 NC_001347.2 + 110187 0.71 0.79173
Target:  5'- -gUGCuuCGGCuCAUCaccaacguggaaGGCGGCUCGCu -3'
miRNA:   3'- aaACGcuGCCGuGUAG------------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 109536 0.68 0.906691
Target:  5'- --gGCGACGGCgugcACGUCGggcguuaugacacGCGGC-CGCc -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGU-------------CGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 109474 0.67 0.93974
Target:  5'- --gGCGGCGGCGCcaUGGCGGg-CGCc -3'
miRNA:   3'- aaaCGCUGCCGUGuaGUCGUCgaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.