miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 106402 0.66 0.963765
Target:  5'- --cGCcgGACGaGCugGacaaguaCAGCGGCUCGCc -3'
miRNA:   3'- aaaCG--CUGC-CGugUa------GUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 106239 0.72 0.705457
Target:  5'- --gGCGGCGGCggugGCGUUGGCAGCaauaGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGUAGUCGUCGag--CG- -5'
1651 3' -54.9 NC_001347.2 + 103614 0.68 0.913302
Target:  5'- -gUG-GGCGaGCACGUCaAGguGCUCGa -3'
miRNA:   3'- aaACgCUGC-CGUGUAG-UCguCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 100957 0.66 0.952775
Target:  5'- --cGCGAUGGagaaCugGUCGGC-GCUCGa -3'
miRNA:   3'- aaaCGCUGCC----GugUAGUCGuCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 100187 0.69 0.858959
Target:  5'- -aUGCG-CGGCGCcgCGGC--CUCGCc -3'
miRNA:   3'- aaACGCuGCCGUGuaGUCGucGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 100140 0.67 0.929877
Target:  5'- cUUGCGGacGCACGUUgaguccaaagAGCAGCUUGUa -3'
miRNA:   3'- aAACGCUgcCGUGUAG----------UCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 98053 0.68 0.909731
Target:  5'- --cGCGGCGGCAgcggccgcggcuucCAUCAucgugaugcaaaccGC-GCUCGCg -3'
miRNA:   3'- aaaCGCUGCCGU--------------GUAGU--------------CGuCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 97633 0.71 0.798039
Target:  5'- --cGCGAaucauauaaaugccCGGCACGUCGuaCAGCUCGUc -3'
miRNA:   3'- aaaCGCU--------------GCCGUGUAGUc-GUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 93437 0.68 0.901072
Target:  5'- --cGCGcACGGCGCGaaUCAGCacguacucgacGGCgaugCGCg -3'
miRNA:   3'- aaaCGC-UGCCGUGU--AGUCG-----------UCGa---GCG- -5'
1651 3' -54.9 NC_001347.2 + 93240 0.67 0.929877
Target:  5'- --aGCGGCGGCACccCGGCucagacgaGGCguuagCGCc -3'
miRNA:   3'- aaaCGCUGCCGUGuaGUCG--------UCGa----GCG- -5'
1651 3' -54.9 NC_001347.2 + 90158 0.67 0.924589
Target:  5'- --aGCGACGGCAaaggcuuagCcGCGGC-CGCg -3'
miRNA:   3'- aaaCGCUGCCGUgua------GuCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 88648 0.68 0.901072
Target:  5'- --aGCGGCGGC-Cugc-GCAGCUuCGCg -3'
miRNA:   3'- aaaCGCUGCCGuGuaguCGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 87627 0.72 0.744811
Target:  5'- --aGCGACGGCGgcugcuguugcuCGcCAGCGGCgCGCg -3'
miRNA:   3'- aaaCGCUGCCGU------------GUaGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 87474 0.69 0.851195
Target:  5'- -gUGCaaaaGGCACGUCGGUAGCUgucgaUGCa -3'
miRNA:   3'- aaACGcug-CCGUGUAGUCGUCGA-----GCG- -5'
1651 3' -54.9 NC_001347.2 + 87287 0.66 0.952775
Target:  5'- -cUGaaaGACGGcCACA-CAGC-GCUCGUu -3'
miRNA:   3'- aaACg--CUGCC-GUGUaGUCGuCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 86256 0.69 0.873143
Target:  5'- --gGCGAucuCGGCGCGcgaagcuUCGGCGGCgugcCGCu -3'
miRNA:   3'- aaaCGCU---GCCGUGU-------AGUCGUCGa---GCG- -5'
1651 3' -54.9 NC_001347.2 + 82720 0.68 0.913302
Target:  5'- --gGUGGCGGUgguGCAgCGGCGGCUgaGCg -3'
miRNA:   3'- aaaCGCUGCCG---UGUaGUCGUCGAg-CG- -5'
1651 3' -54.9 NC_001347.2 + 81568 0.68 0.919064
Target:  5'- --aGCGGCGGCAa--CAGCcAGCgacgaUCGCc -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCG-UCG-----AGCG- -5'
1651 3' -54.9 NC_001347.2 + 79653 0.73 0.685374
Target:  5'- --aGCGccagGCGGCugAUCuGCAGCgCGCu -3'
miRNA:   3'- aaaCGC----UGCCGugUAGuCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 79052 0.7 0.818238
Target:  5'- --cGCGAgaaGGCGCGUCGGCgccaaaugAGC-CGCg -3'
miRNA:   3'- aaaCGCUg--CCGUGUAGUCG--------UCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.