miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 77934 0.66 0.963765
Target:  5'- -gUGCGcucggaGCGGCugGagGcGCAGCUgCGCg -3'
miRNA:   3'- aaACGC------UGCCGugUagU-CGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 75973 0.76 0.494745
Target:  5'- -cUGCGGCGagucgcccaGCGgGUCGGcCAGCUCGCa -3'
miRNA:   3'- aaACGCUGC---------CGUgUAGUC-GUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 75410 0.76 0.514042
Target:  5'- --aGCGGCGGCcgugGCggCGGCAGCggCGCa -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 68703 0.7 0.826749
Target:  5'- --cGCGGCGGCGCAa-AGC-GCgagCGCa -3'
miRNA:   3'- aaaCGCUGCCGUGUagUCGuCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 66518 0.69 0.851195
Target:  5'- --gGCGGCGGCgAUcgCAGCcucCUCGCu -3'
miRNA:   3'- aaaCGCUGCCG-UGuaGUCGuc-GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 65848 0.82 0.257003
Target:  5'- -cUGCGACGGCAgCGcCAGCGGCUgGCc -3'
miRNA:   3'- aaACGCUGCCGU-GUaGUCGUCGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 65173 0.69 0.881003
Target:  5'- -aUGCG-CGGCuACAgcgagugCGGCgauGGCUCGCc -3'
miRNA:   3'- aaACGCuGCCG-UGUa------GUCG---UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 56154 0.66 0.95666
Target:  5'- --aGCGACucauGGuCGC-UCGGCAGCUCcuuGCu -3'
miRNA:   3'- aaaCGCUG----CC-GUGuAGUCGUCGAG---CG- -5'
1651 3' -54.9 NC_001347.2 + 47133 0.68 0.919064
Target:  5'- --gGCGGCGGCaaugGCcgCGGCAGCg--- -3'
miRNA:   3'- aaaCGCUGCCG----UGuaGUCGUCGagcg -5'
1651 3' -54.9 NC_001347.2 + 44037 0.68 0.913302
Target:  5'- --gGCGACGGCAg--CGGUGGUggCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 43662 0.68 0.89395
Target:  5'- --cGCGACaGGCGCGUCgagggGGCAGgaacaccCUUGCg -3'
miRNA:   3'- aaaCGCUG-CCGUGUAG-----UCGUC-------GAGCG- -5'
1651 3' -54.9 NC_001347.2 + 39957 0.66 0.963765
Target:  5'- --gGCGACGGCgaauaaaaGCGaCGuGCGGCgCGCa -3'
miRNA:   3'- aaaCGCUGCCG--------UGUaGU-CGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 39681 0.66 0.966993
Target:  5'- --aGCGACGuGCACGgc-GCGuGCUgGCg -3'
miRNA:   3'- aaaCGCUGC-CGUGUaguCGU-CGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 38752 0.76 0.494745
Target:  5'- --aGCGcCGGCugAggCAGCAGCgUCGCg -3'
miRNA:   3'- aaaCGCuGCCGugUa-GUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 38551 0.74 0.624346
Target:  5'- --cGC-ACGGC-CGUCAGCAGCgaCGCg -3'
miRNA:   3'- aaaCGcUGCCGuGUAGUCGUCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 38376 0.68 0.913302
Target:  5'- --cGCGcACGGCGCGUCcccgccGGCGGCcucCGUc -3'
miRNA:   3'- aaaCGC-UGCCGUGUAG------UCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 38014 0.67 0.93974
Target:  5'- --cGCG-CGGC-C-UCGGCGGCgggCGCc -3'
miRNA:   3'- aaaCGCuGCCGuGuAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 37935 0.67 0.934927
Target:  5'- --cGCGGCGcGCGgGUgCAGguGCagCGCg -3'
miRNA:   3'- aaaCGCUGC-CGUgUA-GUCguCGa-GCG- -5'
1651 3' -54.9 NC_001347.2 + 36852 0.76 0.485221
Target:  5'- --aGUGACGGCG-AUCAGCAGC-CGUg -3'
miRNA:   3'- aaaCGCUGCCGUgUAGUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 36718 0.66 0.952775
Target:  5'- --aGUGGCGGCAg--CAGguGCaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCguCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.