miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 3' -54.9 NC_001347.2 + 39957 0.66 0.963765
Target:  5'- --gGCGACGGCgaauaaaaGCGaCGuGCGGCgCGCa -3'
miRNA:   3'- aaaCGCUGCCG--------UGUaGU-CGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 106402 0.66 0.963765
Target:  5'- --cGCcgGACGaGCugGacaaguaCAGCGGCUCGCc -3'
miRNA:   3'- aaaCG--CUGC-CGugUa------GUCGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 196026 0.66 0.963765
Target:  5'- cUUUGgGACGcGCACccauuacuugCGGCAGCUaUGCu -3'
miRNA:   3'- -AAACgCUGC-CGUGua--------GUCGUCGA-GCG- -5'
1651 3' -54.9 NC_001347.2 + 39681 0.66 0.966993
Target:  5'- --aGCGACGuGCACGgc-GCGuGCUgGCg -3'
miRNA:   3'- aaaCGCUGC-CGUGUaguCGU-CGAgCG- -5'
1651 3' -54.9 NC_001347.2 + 136286 0.66 0.966993
Target:  5'- --cGCcGCGGCcCAUgccCGGCacggGGCUCGCg -3'
miRNA:   3'- aaaCGcUGCCGuGUA---GUCG----UCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 211 0.66 0.95666
Target:  5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3'
miRNA:   3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 87287 0.66 0.952775
Target:  5'- -cUGaaaGACGGcCACA-CAGC-GCUCGUu -3'
miRNA:   3'- aaACg--CUGCC-GUGUaGUCGuCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 20313 0.67 0.934432
Target:  5'- --aGaCGACGGUcgcugccACAgCAGCGGCgUCGCc -3'
miRNA:   3'- aaaC-GCUGCCG-------UGUaGUCGUCG-AGCG- -5'
1651 3' -54.9 NC_001347.2 + 155130 0.67 0.934927
Target:  5'- -aUGaGGCGGcCGCcgCGGCGGCcagCGCu -3'
miRNA:   3'- aaACgCUGCC-GUGuaGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 38014 0.67 0.93974
Target:  5'- --cGCG-CGGC-C-UCGGCGGCgggCGCc -3'
miRNA:   3'- aaaCGCuGCCGuGuAGUCGUCGa--GCG- -5'
1651 3' -54.9 NC_001347.2 + 26781 0.67 0.93974
Target:  5'- --cGUGA-GcCACGUCAuccGCAGCUCGCu -3'
miRNA:   3'- aaaCGCUgCcGUGUAGU---CGUCGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 173832 0.67 0.93974
Target:  5'- --gGCGGCGGCGgAggaggaggaggCGGCGGUuuggaUCGCa -3'
miRNA:   3'- aaaCGCUGCCGUgUa----------GUCGUCG-----AGCG- -5'
1651 3' -54.9 NC_001347.2 + 109474 0.67 0.93974
Target:  5'- --gGCGGCGGCGCcaUGGCGGg-CGCc -3'
miRNA:   3'- aaaCGCUGCCGUGuaGUCGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 162675 0.67 0.942969
Target:  5'- --aGCGGuugGGCGCGUUgaucuaggcccaagAGCAGCUCGa -3'
miRNA:   3'- aaaCGCUg--CCGUGUAG--------------UCGUCGAGCg -5'
1651 3' -54.9 NC_001347.2 + 1349 0.67 0.944318
Target:  5'- --cGCGACGGaccuGCGUCAacugucgccGCGGgaCGCg -3'
miRNA:   3'- aaaCGCUGCCg---UGUAGU---------CGUCgaGCG- -5'
1651 3' -54.9 NC_001347.2 + 31526 0.67 0.948662
Target:  5'- -aUGUGGCuccgccGGCACGUCAGU--UUCGCu -3'
miRNA:   3'- aaACGCUG------CCGUGUAGUCGucGAGCG- -5'
1651 3' -54.9 NC_001347.2 + 36718 0.66 0.952775
Target:  5'- --aGUGGCGGCAg--CAGguGCaCGCu -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCguCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 22519 0.66 0.952775
Target:  5'- uUUUGCGGagaaaGGCGCGUCAuCGGUcugUCGUu -3'
miRNA:   3'- -AAACGCUg----CCGUGUAGUcGUCG---AGCG- -5'
1651 3' -54.9 NC_001347.2 + 149877 0.66 0.95666
Target:  5'- gUUGCcuACGGCGCAg-GGCGGC-CGUu -3'
miRNA:   3'- aAACGc-UGCCGUGUagUCGUCGaGCG- -5'
1651 3' -54.9 NC_001347.2 + 100957 0.66 0.952775
Target:  5'- --cGCGAUGGagaaCugGUCGGC-GCUCGa -3'
miRNA:   3'- aaaCGCUGCC----GugUAGUCGuCGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.