Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 3' | -54.9 | NC_001347.2 | + | 65848 | 0.82 | 0.257003 |
Target: 5'- -cUGCGACGGCAgCGcCAGCGGCUgGCc -3' miRNA: 3'- aaACGCUGCCGU-GUaGUCGUCGAgCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 229690 | 0.66 | 0.95666 |
Target: 5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3' miRNA: 3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 172031 | 0.66 | 0.960322 |
Target: 5'- gUUGCcGCGGCucucCAUCGcCAGCgCGCg -3' miRNA: 3'- aAACGcUGCCGu---GUAGUcGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 211 | 0.66 | 0.95666 |
Target: 5'- --gGUGGCGGgGugUGUCGGCGGUgugCGCg -3' miRNA: 3'- aaaCGCUGCCgU--GUAGUCGUCGa--GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 87287 | 0.66 | 0.952775 |
Target: 5'- -cUGaaaGACGGcCACA-CAGC-GCUCGUu -3' miRNA: 3'- aaACg--CUGCC-GUGUaGUCGuCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 100957 | 0.66 | 0.952775 |
Target: 5'- --cGCGAUGGagaaCugGUCGGC-GCUCGa -3' miRNA: 3'- aaaCGCUGCC----GugUAGUCGuCGAGCg -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 149877 | 0.66 | 0.95666 |
Target: 5'- gUUGCcuACGGCGCAg-GGCGGC-CGUu -3' miRNA: 3'- aAACGc-UGCCGUGUagUCGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 22519 | 0.66 | 0.952775 |
Target: 5'- uUUUGCGGagaaaGGCGCGUCAuCGGUcugUCGUu -3' miRNA: 3'- -AAACGCUg----CCGUGUAGUcGUCG---AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 36718 | 0.66 | 0.952775 |
Target: 5'- --aGUGGCGGCAg--CAGguGCaCGCu -3' miRNA: 3'- aaaCGCUGCCGUguaGUCguCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 56154 | 0.66 | 0.95666 |
Target: 5'- --aGCGACucauGGuCGC-UCGGCAGCUCcuuGCu -3' miRNA: 3'- aaaCGCUG----CC-GUGuAGUCGUCGAG---CG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 191990 | 0.66 | 0.960322 |
Target: 5'- --aGCGGCGGCgACGgaCGGCGGCg-GUa -3' miRNA: 3'- aaaCGCUGCCG-UGUa-GUCGUCGagCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 143034 | 0.66 | 0.963765 |
Target: 5'- --aGCGGCGGCaACAgcuUCGGgAGCagaaccCGCg -3' miRNA: 3'- aaaCGCUGCCG-UGU---AGUCgUCGa-----GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 136286 | 0.66 | 0.966993 |
Target: 5'- --cGCcGCGGCcCAUgccCGGCacggGGCUCGCg -3' miRNA: 3'- aaaCGcUGCCGuGUA---GUCG----UCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 39681 | 0.66 | 0.966993 |
Target: 5'- --aGCGACGuGCACGgc-GCGuGCUgGCg -3' miRNA: 3'- aaaCGCUGC-CGUGUaguCGU-CGAgCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 196026 | 0.66 | 0.963765 |
Target: 5'- cUUUGgGACGcGCACccauuacuugCGGCAGCUaUGCu -3' miRNA: 3'- -AAACgCUGC-CGUGua--------GUCGUCGA-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 106402 | 0.66 | 0.963765 |
Target: 5'- --cGCcgGACGaGCugGacaaguaCAGCGGCUCGCc -3' miRNA: 3'- aaaCG--CUGC-CGugUa------GUCGUCGAGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 39957 | 0.66 | 0.963765 |
Target: 5'- --gGCGACGGCgaauaaaaGCGaCGuGCGGCgCGCa -3' miRNA: 3'- aaaCGCUGCCG--------UGUaGU-CGUCGaGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 77934 | 0.66 | 0.963765 |
Target: 5'- -gUGCGcucggaGCGGCugGagGcGCAGCUgCGCg -3' miRNA: 3'- aaACGC------UGCCGugUagU-CGUCGA-GCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 170066 | 0.66 | 0.963765 |
Target: 5'- --gGUGGCGGCGuCGUCAGuUGGCgucccgagUCGCc -3' miRNA: 3'- aaaCGCUGCCGU-GUAGUC-GUCG--------AGCG- -5' |
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1651 | 3' | -54.9 | NC_001347.2 | + | 209088 | 0.66 | 0.962414 |
Target: 5'- --gGCGAacgcaccaccggaGGCGCAUCgaGGCAGCaguugccccacUCGCu -3' miRNA: 3'- aaaCGCUg------------CCGUGUAG--UCGUCG-----------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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