miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1651 5' -61.6 NC_001347.2 + 88653 0.66 0.785059
Target:  5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3'
miRNA:   3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 199595 0.66 0.776361
Target:  5'- -cGCCGcGCUGCuguuAUCGUcgccaccgccGCCGGCGCc- -3'
miRNA:   3'- ccCGGU-CGACG----UAGCA----------CGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 172263 0.66 0.776361
Target:  5'- aGGCC-GCUGCG-CGUGCCcGUgGUGAa -3'
miRNA:   3'- cCCGGuCGACGUaGCACGGcCG-CGCU- -5'
1651 5' -61.6 NC_001347.2 + 96787 0.66 0.775485
Target:  5'- aGGGUCAGCUagGCAcgCagagagccaccagGUGCCGGCGacuGAc -3'
miRNA:   3'- -CCCGGUCGA--CGUa-G-------------CACGGCCGCg--CU- -5'
1651 5' -61.6 NC_001347.2 + 159455 0.66 0.775485
Target:  5'- cGGCCgcGGCcGC-UCGaugacgaUGUCGGCGCGGc -3'
miRNA:   3'- cCCGG--UCGaCGuAGC-------ACGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 94348 0.66 0.767549
Target:  5'- aGGCCGG-UGCGUCGUccucaucuccGCCuggaGCGCGGc -3'
miRNA:   3'- cCCGGUCgACGUAGCA----------CGGc---CGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 174724 0.66 0.758631
Target:  5'- aGGGCCuGC-GCAacuaCGcGCCGcuGCGCGAa -3'
miRNA:   3'- -CCCGGuCGaCGUa---GCaCGGC--CGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 168510 0.66 0.758631
Target:  5'- cGGuCCAGCUGU-UCGUGCaacugcucggCGGCGUa- -3'
miRNA:   3'- cCC-GGUCGACGuAGCACG----------GCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 87153 0.66 0.749614
Target:  5'- aGGCCGGCUacggggaaacGCG-CGUGCgGGuCGCa- -3'
miRNA:   3'- cCCGGUCGA----------CGUaGCACGgCC-GCGcu -5'
1651 5' -61.6 NC_001347.2 + 85656 0.66 0.749614
Target:  5'- cGGCC-GCcGCGUCGUGCCucCGCa- -3'
miRNA:   3'- cCCGGuCGaCGUAGCACGGccGCGcu -5'
1651 5' -61.6 NC_001347.2 + 38990 0.66 0.740505
Target:  5'- cGGGUCGGCUGCGggguccaccUCGUGCaccaCGGUaGCc- -3'
miRNA:   3'- -CCCGGUCGACGU---------AGCACG----GCCG-CGcu -5'
1651 5' -61.6 NC_001347.2 + 87325 0.66 0.740505
Target:  5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3'
miRNA:   3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 166164 0.66 0.737756
Target:  5'- cGGGCCAGgU-CAUCGgcgcuagcgcgcgaUGUCGGUGCa- -3'
miRNA:   3'- -CCCGGUCgAcGUAGC--------------ACGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 185032 0.67 0.722046
Target:  5'- gGGGuCCAGU----UCG-GCCGGCGCGc -3'
miRNA:   3'- -CCC-GGUCGacguAGCaCGGCCGCGCu -5'
1651 5' -61.6 NC_001347.2 + 170340 0.67 0.722046
Target:  5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3'
miRNA:   3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 110667 0.67 0.71271
Target:  5'- -aGCCAGUUcGCcuuUCGcGCCGGCGCc- -3'
miRNA:   3'- ccCGGUCGA-CGu--AGCaCGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 113637 0.67 0.703314
Target:  5'- -cGCCGGCUGgAgagCGagagGCCGGCGUa- -3'
miRNA:   3'- ccCGGUCGACgUa--GCa---CGGCCGCGcu -5'
1651 5' -61.6 NC_001347.2 + 142565 0.67 0.703314
Target:  5'- aGGCUGGCgGCGUCG-GCgGGagcaGCGGg -3'
miRNA:   3'- cCCGGUCGaCGUAGCaCGgCCg---CGCU- -5'
1651 5' -61.6 NC_001347.2 + 8787 0.67 0.703314
Target:  5'- cGGaGCCGGCUcagaGCGgaccacgguugaUUGUGCCcggaccgugGGCGCGAc -3'
miRNA:   3'- -CC-CGGUCGA----CGU------------AGCACGG---------CCGCGCU- -5'
1651 5' -61.6 NC_001347.2 + 39652 0.67 0.700484
Target:  5'- cGGGCgacacgCAGCUggcuuuuauaggcaGCGaCGUGCaCGGCGCGu -3'
miRNA:   3'- -CCCG------GUCGA--------------CGUaGCACG-GCCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.