Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1651 | 5' | -61.6 | NC_001347.2 | + | 88653 | 0.66 | 0.785059 |
Target: 5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3' miRNA: 3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 87325 | 0.66 | 0.740505 |
Target: 5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3' miRNA: 3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 166164 | 0.66 | 0.737756 |
Target: 5'- cGGGCCAGgU-CAUCGgcgcuagcgcgcgaUGUCGGUGCa- -3' miRNA: 3'- -CCCGGUCgAcGUAGC--------------ACGGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 87153 | 0.66 | 0.749614 |
Target: 5'- aGGCCGGCUacggggaaacGCG-CGUGCgGGuCGCa- -3' miRNA: 3'- cCCGGUCGA----------CGUaGCACGgCC-GCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 38990 | 0.66 | 0.740505 |
Target: 5'- cGGGUCGGCUGCGggguccaccUCGUGCaccaCGGUaGCc- -3' miRNA: 3'- -CCCGGUCGACGU---------AGCACG----GCCG-CGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 168510 | 0.66 | 0.758631 |
Target: 5'- cGGuCCAGCUGU-UCGUGCaacugcucggCGGCGUa- -3' miRNA: 3'- cCC-GGUCGACGuAGCACG----------GCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 85656 | 0.66 | 0.749614 |
Target: 5'- cGGCC-GCcGCGUCGUGCCucCGCa- -3' miRNA: 3'- cCCGGuCGaCGUAGCACGGccGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 94348 | 0.66 | 0.767549 |
Target: 5'- aGGCCGG-UGCGUCGUccucaucuccGCCuggaGCGCGGc -3' miRNA: 3'- cCCGGUCgACGUAGCA----------CGGc---CGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 174724 | 0.66 | 0.758631 |
Target: 5'- aGGGCCuGC-GCAacuaCGcGCCGcuGCGCGAa -3' miRNA: 3'- -CCCGGuCGaCGUa---GCaCGGC--CGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 172263 | 0.66 | 0.776361 |
Target: 5'- aGGCC-GCUGCG-CGUGCCcGUgGUGAa -3' miRNA: 3'- cCCGGuCGACGUaGCACGGcCG-CGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 159455 | 0.66 | 0.775485 |
Target: 5'- cGGCCgcGGCcGC-UCGaugacgaUGUCGGCGCGGc -3' miRNA: 3'- cCCGG--UCGaCGuAGC-------ACGGCCGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 96787 | 0.66 | 0.775485 |
Target: 5'- aGGGUCAGCUagGCAcgCagagagccaccagGUGCCGGCGacuGAc -3' miRNA: 3'- -CCCGGUCGA--CGUa-G-------------CACGGCCGCg--CU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 199595 | 0.66 | 0.776361 |
Target: 5'- -cGCCGcGCUGCuguuAUCGUcgccaccgccGCCGGCGCc- -3' miRNA: 3'- ccCGGU-CGACG----UAGCA----------CGGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 39652 | 0.67 | 0.700484 |
Target: 5'- cGGGCgacacgCAGCUggcuuuuauaggcaGCGaCGUGCaCGGCGCGu -3' miRNA: 3'- -CCCG------GUCGA--------------CGUaGCACG-GCCGCGCu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 8787 | 0.67 | 0.703314 |
Target: 5'- cGGaGCCGGCUcagaGCGgaccacgguugaUUGUGCCcggaccgugGGCGCGAc -3' miRNA: 3'- -CC-CGGUCGA----CGU------------AGCACGG---------CCGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 142565 | 0.67 | 0.703314 |
Target: 5'- aGGCUGGCgGCGUCG-GCgGGagcaGCGGg -3' miRNA: 3'- cCCGGUCGaCGUAGCaCGgCCg---CGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 113637 | 0.67 | 0.703314 |
Target: 5'- -cGCCGGCUGgAgagCGagagGCCGGCGUa- -3' miRNA: 3'- ccCGGUCGACgUa--GCa---CGGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 110667 | 0.67 | 0.71271 |
Target: 5'- -aGCCAGUUcGCcuuUCGcGCCGGCGCc- -3' miRNA: 3'- ccCGGUCGA-CGu--AGCaCGGCCGCGcu -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 170340 | 0.67 | 0.722046 |
Target: 5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3' miRNA: 3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5' |
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1651 | 5' | -61.6 | NC_001347.2 | + | 58 | 0.67 | 0.68437 |
Target: 5'- cGGCCGGgUGgGUgUGUGCCGGguguguCGCGGg -3' miRNA: 3'- cCCGGUCgACgUA-GCACGGCC------GCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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